Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00011 TCTTACATTTTTCATGCCGGAGGGAACGAGAGCGGAACAACCCATTTTCATTGTTTGAATCTTTACCTAACCTTTGAAACCCGGAAAGGGTTCTTCGGTCGATACTCCAAAATGGCTGTTGCTCCGTTATGTCAATCCACCATGCAACCCCAGGTGAGTGGCTTTATCGGAGGCCTCACTTTTCAGAAACCAGCTCCTTCTCAACCTACCTCTCTTCCCTTTTCGAGGAGGAGGTTCAGAAATGTGGTAAAAGCTTCAGCTCGGGTTGATAAATACTCAAAATCTGATATAATCGTCTCTCCCTCCATCCTCTCTGCTAACTTTGCAAAATTGGGAGAGCAGGTGAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGACGTAATGGATGGTCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCCGAGCAGCGTGTGCCAGACTTTATAAAGGCTGGTGCCGATATTGTCAGCGTTCATTGTGAGCAATCTTCCACAATCCATCTGCACCGTACCCTTAATCAATCTTACATTTTTCATGCCGGAGGGAACGAGAGCGGAACAACCCATTTTCATTGTTTGAATCTTTACCTAACCTTTGAAACCCGGAAAGGGTTCTTCGGTCGATACTCCAAAATGGCTGTTGCTCCGTTATGTCAATCCACCATGCAACCCCAGGTGAGTGGCTTTATCGGAGGCCTCACTTTTCAGAAACCAGCTCCTTCTCAACCTACCTCTCTTCCCTTTTCGAGGAGGAGGTTCAGAAATGTGGTAAAAGCTTCAGCTCGGGTTGATAAATACTCAAAATCTGATATAATCGTCTCTCCCTCCATCCTCTCTGCTAACTTTGCAAAATTGGGAGAGCAGGTGAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGACGTAATGGATGGTCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCCGAGCAGCGTGTGCCAGACTTTATAAAGGCTGGTGCCGATATTGTCAGCGTTCATTGTGAGCAATCTTCCACAATCCATCTGCACCGTACCCTTAATCAAATAAAAAGTCTTGGAGCTAAAGCTGGAGTGGTCCTAAATCCTGCTACTTCACTCACCACAATAGAATATGTCCTTGACGTGGTTGATTTAGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTGAAGAAAATCTCAGAATTAAGAAGATTATGTGCTGAAAAGGGAGTGAACCCATGGATCGAAGTGGACGGTGGAGTCGGTCCTGGCAATGCGTACAAGGTCATTGAGGCTGGAGCCAATGCCTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCTGAGGAGAGAATTTGCAGCTGCATATATCAGAAGGTTGTGTTCTTCAAGCTCTTATCTCAGACATGGTTGCCATCTCCACAGAAGAAGCCTGTAGATTGCCACTTGAAGATTTGTTATGTACTATAA 1632 44.85 SYIFHAGGNESGTTHFHCLNLYLTFETRKGFFGRYSKMAVAPLCQSTMQPQVSGFIGGLTFQKPAPSQPTSLPFSRRRFRNVVKASARVDKYSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQSYIFHAGGNESGTTHFHCLNLYLTFETRKGFFGRYSKMAVAPLCQSTMQPQVSGFIGGLTFQKPAPSQPTSLPFSRRRFRNVVKASARVDKYSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATSLTTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPGNAYKVIEAGANALVAGSAVFGAKDYAEERICSCIYQKVVFFKLLSQTWLPSPQKKPVDCHLKICYVL 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 71554 75983 - Cp4.1LG20g00300.1 Cpe20g00011 486640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00011 543 CDD TIM_phosphate_binding 99 191 - -
Cpe20g00011 543 Pfam Ribulose-phosphate 3 epimerase family 99 199 IPR000056 GO:0005975|GO:0016857
Cpe20g00011 543 Pfam Ribulose-phosphate 3 epimerase family 298 496 IPR000056 GO:0005975|GO:0016857
Cpe20g00011 543 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 126 140 IPR000056 GO:0005975|GO:0016857
Cpe20g00011 543 SUPERFAMILY Ribulose-phoshate binding barrel 291 503 IPR011060 -
Cpe20g00011 543 CDD RPE 297 503 IPR000056 GO:0005975|GO:0016857
Cpe20g00011 543 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 429 451 IPR000056 GO:0005975|GO:0016857
Cpe20g00011 543 TIGRFAM rpe: ribulose-phosphate 3-epimerase 298 503 IPR026019 GO:0004750|GO:0006098
Cpe20g00011 543 SUPERFAMILY Ribulose-phoshate binding barrel 97 199 IPR011060 -
Cpe20g00011 543 Gene3D Aldolase class I 87 210 IPR013785 -
Cpe20g00011 543 Gene3D Aldolase class I 286 506 IPR013785 -
Cpe20g00011 543 PANTHER - 32 200 - -
Cpe20g00011 543 PANTHER - 231 512 - -
Cpe20g00011 543 Hamap Ribulose-phosphate 3-epimerase [rpe]. 295 511 IPR026019 GO:0004750|GO:0006098
Cpe20g00011 543 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 325 339 IPR000056 GO:0005975|GO:0016857
Cpe20g00011 543 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 32 200 IPR000056 GO:0005975|GO:0016857
Cpe20g00011 543 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 231 512 IPR000056 GO:0005975|GO:0016857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00011 K01783 rpe, RPE; ribulose-phosphate 3-epimerase [EC:5.1.3.1] - csv:101219871 497.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02569 Cpe-Chr1:20906003 Cpe20g00011 Cpe-Chr20:71554 7.04E-12 dispersed
Cpe13g01118 Cpe-Chr13:8976694 Cpe20g00011 Cpe-Chr20:71554 8.34E-12 dispersed
Cpe02g01050 Cpe-Chr2:9672939 Cpe20g00011 Cpe-Chr20:71554 8.62E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g576 Blo04g00777 Blo16g00182 . . . Bpe13g00298 Bma06g00168 . Cmo13g01200 . . . . . . Cpe20g00011 . . . . . . . . . . . . . . . Cone2ag0833 Cone16ag0181 . . . Csa01g00566 Chy12g01528 Cme12g01976 . . Bda11g01705 Bda14g00858 . Bpe15g00597 Bma03g00837 . Sed08g2085 . . Cma13g01146 . Car13g00975 . . . Bhi08g01141 Tan05g2423 Cmetu12g1896 Lac10g0094 Hepe07g2496 . . Cla04g01185 Cam04g1241 Cec01g1753 Cco01g1799 Clacu04g1270 Cmu04g1249 Cre01g1542 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004286 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00011 Cpe_Chr20 FPKM 2.656383 4.473958 0.301589 0.576281 0.802976 1.081265 0.698209 0.0 2.80526 3.069805