Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00014 ATGGATTGGAGTTCGAATTTGTGCGATAAAACGGTTAAGCTGAAAATAAAAAAATTGGAGAGCACTGGTAGCAGGCAAGTGACCTTCTCTAAGAGAAAAAATGGGATTATGAAGAAAGCTAAGGAGCTGGCTATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCAACTGGAAAGCCGACGCTATATCAAGGTGAACGCAGCAGCATCGAGGAGGTCATTACAAAATTTGCTGAATTGACTCCACAGGAGAGGGCAAAAAGGAAACTGGAAAGCCTTGAAGCGCTGAAGAAAACATTCAAGAAGTTAGACCACGATGTAAACATAAAAGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGCAGGAATTGATCAATGAAGTTACCTGTTCCTCTTATCCCTTCAGCTATTGGAGGAATCCTGATAGTATCAGCAATATACAACAGCTCCAACAGATGGAAGGTTTAATAAGGGAGTCCCTAAACCAGACACGTCTACACAAGGAAAATTTAAGAAGACACCAACTTCTCTCACAGGAATTCACGGGCCAGTATCCGGGTGGTGAGATGTCCTTACCTTTGTTAATGGACGAAATGCAAGGCATTCAACCCCTGTTATGGCTTCCCAACTATGGGACTCAACAGATTACTTTGCAAAATGAGCCTAACTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCCAGTTACTACAACCCTGGGAAGCAAATTGAAGCTGGAGTATCTGGTCAAGTTGATAGCATGCCACAGGGTGATGGGGGTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGAGCAATATCAATACCCCCCTACATGTGATGGTTCCAGCTTCCAAGATGAAAAGAGACTGAACCTTGAGATGGAGATGAACTTGCATGGAAATTATGTGGACAACCAACTAAATGGGAAGTTGGACCTCTCAAGATCTCTATATGATGATGAGCAGCATCCTTGGGGTTCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAGCAATGCGTACCACCACCATGTAGGGCTGAAGGATCATTTGTGTTACTCTAATTCATCTGGGGTTTCTGGGTTTTCTACTTCTGTTTGTGCTTCCAGTTTAAAAGTGTCAAAGCAGCCGGGGTTTCCTGTTTTGAGCGTCGATTTCTTGGGGAATCCTGTAGTGATTTCGGATCGAAATGGTATTAGAAACTCAAACGCTAAAGCCCCAAATAGACTGACCGTTTATGCACAGGCATCGATTTGTGTAAGCCGAGCTCGGAGATGGTGGGAAAAAACCCTGAAACCTAACATGGTGGAGATCCATTCTGCACAAGCCCTTGTGGATGCATTGCTTGATGCTGGCGATAGATTAGCCATCATTGACTTCTATTCCCCTGGCTGTGGAGGTTGCAAAGCCCTTCATCCTAAGATCTGTCAACTGGCTGAATTGAACCCTGATGCAATTTTTCTGAAAGTTAACTTTGAGGAGCTCAAAACCATGTGCCAAGCTCTCCATATTCGTGTTCTTCCTTTCTTTAGATTCTATAGAGGCGGAGAAGGTCGTGTCTGTAGCTTCAGCTGTACAAATGCAACTATTAAGAAATTCAAGGATGCATTGGCTGAACACGGAAGCGACCGGAGTAGCATCCTTCCAGCGAAAGGATTAGACGAGTCGGAGCTGGAACGGTTAGCAATGGCGGGTGAATTATCATCATCATATCTGAAGGAAAGAACATTGAAGGGTGTAGCGATGAAAGAAATGGATTGTTACGGTTCTTGGGGAACATCAGGCAATAAAATGGAAGTCATGGAAGAGAACAACATGATTCTTAAGTTTTCTAATACCACAGATGAAGCGCGCGGATTGTTCGACCTGGAGAGGCATTTTGCGTTCTATGGGGCTTATCATAGCAACCCAACAAATATATTTATCCATATTCTCTTCGTCTGGCCAATATTCTTCACTGCTCTCATGCTCTTCTACTACACCCCTTCCTTCTATTCTTTTCCCAAATGCCCTTGCGGCTTCAATACTGGCCTCGTTTTGAATTTTGGTTTCTTGTTCGCTTTGGTGTATGCCGTTTTCTACATACTTTTTGATAAGAGAGCTGGATCTCTGGCTGCTTTTATGTGTTTTCTCTGCTGGGTTGGAGCAAGCGTTTTCGCTTTTAAACTTGGATGGACGCTTACTTGGAAGGTGGTGTTGGCTGCACAGTTGTTCTGCTGGACAAGTCAGTTTATTGGCCATGGGGTGTTCGAGAAACGGGCACCCGCTCTCATTGACAACCTTGCCCAAGCTTTTCTAATGGCTCCATTCTTCGTTTTGTTGGAGATTCTTCAAGCTTTGTTCAAATATGAACCATACAACGGTTTTCACGCAAGCGTGAAGGCGAAGATCGAAGCCAAGAAGAAAGCTTGGGAAGGAAAGAAAGAAAAGAAAAGCTCTTAG 2481 43.65 MDWSSNLCDKTVKLKIKKLESTGSRQVTFSKRKNGIMKKAKELAILCDIDIVLLMFSPTGKPTLYQGERSSIEEVITKFAELTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSSQDFEQELINEVTCSSYPFSYWRNPDSISNIQQLQQMEGLIRESLNQTRLHKENLRRHQLLSQEFTGQYPGGEMSLPLLMDEMQGIQPLLWLPNYGTQQITLQNEPNFLQPGDVECSFPSYPSYYNPGKQIEAGVSGQVDSMPQGDGGLNELSGTSCSTLQLGEQYQYPPTCDGSSFQDEKRLNLEMEMNLHGNYVDNQLNGKLDLSRSLYDDEQHPWGSIPGPCSIPMYQSSNAYHHHVGLKDHLCYSNSSGVSGFSTSVCASSLKVSKQPGFPVLSVDFLGNPVVISDRNGIRNSNAKAPNRLTVYAQASICVSRARRWWEKTLKPNMVEIHSAQALVDALLDAGDRLAIIDFYSPGCGGCKALHPKICQLAELNPDAIFLKVNFEELKTMCQALHIRVLPFFRFYRGGEGRVCSFSCTNATIKKFKDALAEHGSDRSSILPAKGLDESELERLAMAGELSSSYLKERTLKGVAMKEMDCYGSWGTSGNKMEVMEENNMILKFSNTTDEARGLFDLERHFAFYGAYHSNPTNIFIHILFVWPIFFTALMLFYYTPSFYSFPKCPCGFNTGLVLNFGFLFALVYAVFYILFDKRAGSLAAFMCFLCWVGASVFAFKLGWTLTWKVVLAAQLFCWTSQFIGHGVFEKRAPALIDNLAQAFLMAPFFVLLEILQALFKYEPYNGFHASVKAKIEAKKKAWEGKKEKKSS 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 81473 92628 - Cp4.1LG20g00360.1 Cpe20g00014 486643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00014 826 Gene3D - 22 104 IPR036879 GO:0003677|GO:0046983
Cpe20g00014 826 Coils Coil 85 105 - -
Cpe20g00014 826 SUPERFAMILY SRF-like 13 103 IPR036879 GO:0003677|GO:0046983
Cpe20g00014 826 PANTHER THIOREDOXIN, MITOCHONDRIAL 350 618 - -
Cpe20g00014 826 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 63 IPR002100 GO:0003677|GO:0046983
Cpe20g00014 826 PANTHER THIOREDOXIN-LIKE 1-2, CHLOROPLASTIC 350 618 - -
Cpe20g00014 826 Gene3D Glutaredoxin 437 555 - -
Cpe20g00014 826 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Cpe20g00014 826 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cpe20g00014 826 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cpe20g00014 826 SUPERFAMILY Thioredoxin-like 437 554 IPR036249 -
Cpe20g00014 826 Pfam Thioredoxin 461 535 IPR013766 -
Cpe20g00014 826 Pfam 2-hydroxy-palmitic acid dioxygenase Mpo1-like 635 792 IPR009305 -
Cpe20g00014 826 ProSiteProfiles MADS-box domain profile. 13 69 IPR002100 GO:0003677|GO:0046983
Cpe20g00014 826 ProSiteProfiles Thioredoxin domain profile. 413 582 IPR013766 -
Cpe20g00014 826 CDD TRX_family 464 551 - -
Cpe20g00014 826 SMART madsneu2 12 68 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00014 - - - cmax:111495072 687.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01056 Cpe-Chr2:9699602 Cpe20g00014 Cpe-Chr20:81473 0 dispersed
Cpe03g00929 Cpe-Chr3:6393254 Cpe20g00014 Cpe-Chr20:81473 1.55E-63 dispersed
Cpe08g00020 Cpe-Chr8:138050 Cpe20g00014 Cpe-Chr20:81473 6.56E-71 dispersed
Cpe08g00591 Cpe-Chr8:3897763 Cpe20g00014 Cpe-Chr20:81473 3.30E-43 dispersed
Cpe02g01054 Cpe-Chr2:9691553 Cpe20g00014 Cpe-Chr20:81473 1.01E-134 transposed
Cpe18g00785 Cpe-Chr18:7434536 Cpe20g00014 Cpe-Chr20:81473 1.40E-45 wgd
Cpe02g01053 Cpe-Chr2:9687173 Cpe20g00014 Cpe-Chr20:81473 6.06E-96 wgd
Cpe20g00014 Cpe-Chr20:81473 Cpe04g01492 Cpe-Chr4:11835397 2.55E-102 wgd
Cpe20g00014 Cpe-Chr20:81473 Cpe09g00188 Cpe-Chr9:1085213 9.95E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g568 Blo04g00776 Blo16g00183 . . . Bpe13g00297 . . Cmo13g01195 . . . . . . Cpe20g00014 . . . . . . . . . . . . . . . Cone2ag0839 Cone16ag0176 . . Lsi02g00083 Csa01g00562 Chy12g01531 Cme12g01980 . . . . . . . . Sed08g2081 . . Cma13g01140 . Car13g00971 . . . Bhi08g01145 Tan05g2429 . . Hepe07g2500 . . Cla04g01189 Cam04g1246 Cec01g1757 Cco01g1802 Clacu04g1274 Cmu04g1253 Cre01g1546 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023289 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51083 PF06127 DUF962 1.80E-29 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00014 Cpe_Chr20 FPKM 20.769304 24.235622 13.617423 14.217372 19.568268 24.15799 21.507355 21.403706 18.873581 19.726871