Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00016 ATGTTGGATTGTAAGGATCCTGCTATTAAGCTTTTTGGCCGGAATATCCCTCTTTCCGACGACGTTGAAGCTCCGGCGGTTCATTCCCATGACTTCAGTTCTGAGAAACATGCAGAACCCAGGAAGGACGCAAGTGTAGATGATCTTGAGAAACCTGTTGATGGTTCAGATGATTCAAGAAACCTGGAGGGCGGGCAAGAGGGTAGCGTGAATCCCAAAACGCCGTCTATAGATGAAGAAACTGCGAGACCCATTAATGGAGAACCAGAGAGTGAGAGGCTTTATTCAGAGAAAACCCTAAAGAAACCTGATAAATTGCTTCCATGTCCTCGCTGCAAAAGCATGGACACAAAGTTTTGTTACTACAACAATTACAATGTCAATCAACCTCGCCATTTTTGTAAGGCTTGTCAAAGATACTGGACCGCTGGAGGCATCATGAGGAACGTGCCGGTTGGAGCCGGTCGCCGGAAGAGCAAAAACTCTGCTTCTTATTACCGTCACATCACAATCTCTGAGGCTCTTGAAGCTGCTGAAATTGAGGCTTCAAATGGAACCCACAAACCAAAATTCATTGGTAACTGTGGCAGAGTCCTCAGTTTCAATTTGGATGCACCCAGTTCTATCCCTAAAGGGTGTGATAAAAGCTGGAGTTTGTCTTCTATGGCAGTTCAAACACCATCAGAATTGAAAACCAATGGCTTCCCTTCTCAAATTTCTTGTCTTTCTGGAGTTCCGTGTCCTTTGGTTTGGAATTCATCAGTTTCTCCACCACCCTTCGGCCCTCCAGGATTTCCCTTTTCTTTTCTTCCACCAACTACTTGGAGCTGTGGGGTTCCAGGACCATGGAACACCCCGTGGTTTTCACCACAAGATTCCACAGCACAAAAATCTAAAGCTTCTCCAACACTGGGAAAGCATCAAAGAGACAATGAAATGGCGAAAGAAGATGCCATTTCAAGTAAAGAAGAGGGAGTTAAGCAGAGAAATGGAGGTGTATTGACCCCAAAGACTTTAAGGATTGATGACCCAAGTGAGGCTGCAAAAAGTTCCATATGGGCAACGCTTGGGATAAAGAATGAATCAATGAGTGGGGGAAGAAATCTGTTCAAAACCTTTGAACCCAAGGGCCATGAGAAGGTTCCTGTTTCTAAAAACGCCTCAGTGTTGCAGGCAAACCCTGCAGCCTTGTCGAGATCTCTCGTCTTTCATGAGAGCTCTTGA 1224 45.34 MLDCKDPAIKLFGRNIPLSDDVEAPAVHSHDFSSEKHAEPRKDASVDDLEKPVDGSDDSRNLEGGQEGSVNPKTPSIDEETARPINGEPESERLYSEKTLKKPDKLLPCPRCKSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGIMRNVPVGAGRRKSKNSASYYRHITISEALEAAEIEASNGTHKPKFIGNCGRVLSFNLDAPSSIPKGCDKSWSLSSMAVQTPSELKTNGFPSQISCLSGVPCPLVWNSSVSPPPFGPPGFPFSFLPPTTWSCGVPGPWNTPWFSPQDSTAQKSKASPTLGKHQRDNEMAKEDAISSKEEGVKQRNGGVLTPKTLRIDDPSEAAKSSIWATLGIKNESMSGGRNLFKTFEPKGHEKVPVSKNASVLQANPAALSRSLVFHESS 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 95532 98013 - Cp4.1LG20g00260.1 Cpe20g00016 486645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00016 407 MobiDBLite consensus disorder prediction 14 99 - -
Cpe20g00016 407 MobiDBLite consensus disorder prediction 24 61 - -
Cpe20g00016 407 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Cpe20g00016 407 PANTHER CYCLIC DOF FACTOR 2 1 406 IPR045174 GO:0003700|GO:0006355
Cpe20g00016 407 MobiDBLite consensus disorder prediction 303 324 - -
Cpe20g00016 407 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Cpe20g00016 407 MobiDBLite consensus disorder prediction 83 99 - -
Cpe20g00016 407 Pfam Dof domain, zinc finger 105 161 IPR003851 GO:0003677|GO:0006355
Cpe20g00016 407 PANTHER CYCLIC DOF FACTOR 1 1 406 - -
Cpe20g00016 407 MobiDBLite consensus disorder prediction 62 76 - -
Cpe20g00016 407 MobiDBLite consensus disorder prediction 289 329 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe18g00789 Cpe20g00016 CCT
Cpe18g00789 Cpe20g00016 ECH
Cpe04g01497 Cpe20g00016 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00808 Cpe-Chr9:7508869 Cpe20g00016 Cpe-Chr20:95532 9.23E-31 dispersed
Cpe01g01472 Cpe-Chr1:8794573 Cpe20g00016 Cpe-Chr20:95532 9.13E-53 wgd
Cpe18g00789 Cpe-Chr18:7448845 Cpe20g00016 Cpe-Chr20:95532 5.32E-113 wgd
Cpe02g01058 Cpe-Chr2:9712224 Cpe20g00016 Cpe-Chr20:95532 0 wgd
Cpe20g00016 Cpe-Chr20:95532 Cpe04g01497 Cpe-Chr4:11852184 2.39E-114 wgd
Cpe20g00016 Cpe-Chr20:95532 Cpe09g00184 Cpe-Chr9:1063668 2.65E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51084 PF02701 zf-Dof 5.10E-32 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00016 - - cmos:111431399 785.408