Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00017 CGGCATATCCACCAGAAACCATTGCATTTCCAGCAAACGGTGCAAGCTGAATTTCAAATTCTGCTTGTGATAAATGCATTGACAACTGATCAGGCTCCCTTTGGACAGCTTCAACAGGCTCAAAAGTTGGGCTTGGGGAGGTGGGCCCAGGGGGTATCTGGAAAATGTGTACCAAAAACGTTGATTCTTTGCCGTCCGTCACAATGCACTGAGACCCTCCCTTTCACCGAACTGATTCAACGTCAACGAGGCGTTAACTTTAGACGAACGTTACCGAAGCAAGGCTCGGGGTTTCCGAAGCTCTTGAACTTGGAAAAAAAGAAAGAAAGAAAGAAAGAGAGGACCGAGTCCAATACAGACAAACGCAAAAGATCCCCTTCCTTCATAAGCCTACAAACAATCGGATTGTGTCACCGATACACAGTTTCTGAGGGAGCGGAGCTAAGACTTCCCTTTTGCAACCTCCGTGAGACTCTGAACCAAATTTTGAAGCTGAGGGCTTCGAGAATTGAGGGAAATCGAGCACAAGAGAGACGTTTGAAGGAGCTTTTGTTTTTTTTCACAAGAATGGGTGATCACATGGTCTTGTGTGTGGACCGCCTCAATAAGCCTGAAAGCTTGCAGTCGCTACCGGGAACTACTGCTCCAGGGTCTTCTTTAGAATCTTCATCTTCTCAAAATTCAGAGCCACCTAATTATCAGCCTGGTTATACCTTGCCTGTACCACCCCCTCGCTCGGAAGATGCTACCATTGATATGAGTGAAGGTTGGCCGGTCTCTGAAACTGCTTTAGATTTGCATGATCCACGACTTTTGGCTATGGCAGCAGCAGAACGCCACTTTCTTGAGGCAGAATACGATGAATATGCAGATGCCAGTGCAAATGGAACAGCGTTTTGCCGATCTGCTGCTCTGATTTTATTGGCTCTTTTACTGTTGAGGCACGCTCTGTACCTTACAAATGGTGATGGAGAAGATGATGCTTACACTTTTTTCTCGCTTTTATTGCTACGAGCTGTCGGATTTCTTCTTCCCTGCTACATTATGGCATGGGCTATCAGCATACTACAGCGTCGGAGACAAAGACAGGAAGCTGCAGCGCTTGCAGCAACTGAAGTTGCATTTATGCTGCAGGCAGCACAAGGTCAGAGCCTCCAGTTTACCATTGCTCCAGGGCCTGTAGTGACGCCTCATCAAGAGCCACTCCAATAA 1212 47.11 RHIHQKPLHFQQTVQAEFQILLVINALTTDQAPFGQLQQAQKLGLGRWAQGVSGKCVPKTLILCRPSQCTETLPFTELIQRQRGVNFRRTLPKQGSGFPKLLNLEKKKERKKERTESNTDKRKRSPSFISLQTIGLCHRYTVSEGAELRLPFCNLRETLNQILKLRASRIEGNRAQERRLKELLFFFTRMGDHMVLCVDRLNKPESLQSLPGTTAPGSSLESSSSQNSEPPNYQPGYTLPVPPPRSEDATIDMSEGWPVSETALDLHDPRLLAMAAAERHFLEAEYDEYADASANGTAFCRSAALILLALLLLRHALYLTNGDGEDDAYTFFSLLLLRAVGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMLQAAQGQSLQFTIAPGPVVTPHQEPLQ 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 100348 105976 + Cp4.1LG20g00180.1 Cpe20g00017 486646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00017 403 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 232 390 IPR033275 -
Cpe20g00017 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 232 390 - -
Cpe20g00017 403 MobiDBLite consensus disorder prediction 102 123 - -
Cpe20g00017 403 Pfam Protein of unknown function (DUF3675) 235 353 IPR022143 -
Cpe20g00017 403 MobiDBLite consensus disorder prediction 208 234 - -
Cpe20g00017 403 MobiDBLite consensus disorder prediction 93 124 - -
Cpe20g00017 403 MobiDBLite consensus disorder prediction 208 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00017 - - - csv:101217964 293.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00706 Cpe-Chr11:5142548 Cpe20g00017 Cpe-Chr20:100348 7.54E-55 dispersed
Cpe20g00017 Cpe-Chr20:100348 Cpe03g00745 Cpe-Chr3:4574406 4.67E-10 dispersed
Cpe01g01464 Cpe-Chr1:8766008 Cpe20g00017 Cpe-Chr20:100348 1.51E-49 wgd
Cpe01g01464 Cpe-Chr1:8766008 Cpe20g00017 Cpe-Chr20:100348 1.51E-49 wgd
Cpe02g01060 Cpe-Chr2:9724559 Cpe20g00017 Cpe-Chr20:100348 3.99E-120 wgd
Cpe20g00017 Cpe-Chr20:100348 Cpe09g00179 Cpe-Chr9:1039886 1.95E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g554 Blo04g00770 . . . . . . . Cmo13g01189 . . . . . . Cpe20g00017 . . . . . . . . . . . . . . . Cone2ag0845 Cone16ag0170 . . Lsi02g00075 Csa01g00552 Chy12g01538 Cme12g01990 . . . Bda14g00852 . Bpe15g00601 Bma03g00831 . . . . Cma13g01135 . Car13g00966 . . . Bhi08g01164 Tan05g2438 . Lac10g0079 Hepe07g2507 . . Cla04g01196 Cam04g1255 Cec01g1766 Cco01g1813 Clacu04g1285 Cmu04g1261 Cre01g1554 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00017 Cpe_Chr20 FPKM 15.0478 20.516584 1.275685 0.646933 2.627815 2.817829 1.94119 1.677368 1.063929 1.587213