Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00022 TTGCTCAGTGATTATGTAAAATCCAGAAAATGCTCTTTGAGGAACACCAAAGTTCTACATGCCAAGTTACTCCGAGCAACTCTTCTTCATTCCAATATCTATGTTTCAAATTCTTTGCTGGATTGCTACTCAAAGTCTAACTCTCTGGACCATGCACTCAAGCTGTTTGATACAATGCTCCACCCAAATGTCATTTCTTGGAATATCCTTATCTCCAGTTTCAACCACAACTTCATGTATTTGGATTCGTGGAGAACATTTTGCAGGATGCATTTCCTGGGTTTTGAACCCAGCGAGATAACGTATGGGAGTGTTTTATCTGCTTGTGCTGCCATTCAAGCCCCAATGTTTGGTAAGCAGGTCTATTCACTTGCTGTGAGAAATGGGTTTTTTGTTAATGGTTATGTTCGAGCAGGGATGATCGATTTGTTTGCAAAAGATTCTAGTTTTCTGGATGCTCTAAGGGTGTTTCATGATGTTGATTGTGAGAACGTGGTGTGCTGGAATGCTATTGTGTCCGCAGCTGTAAGGAATGGGGAGAATTTTATGGCTTTGGATCTTTACAACACAATGTGTCATGGGTTCTTGGAGCCTAATAGTTTCACGTTTTCTAGTGTTCTAACTGCGTGTGCTGCACTTGAACATCCTGAATTTGGGAAAAGAGTTCAAGGGAAAGTGATTAAATGTGGCGGAGAAGATGTTTTTGTAGAGACAGCCCTCATTGATTTGTATAGCAAGTGTGGAGAAATGGATGAAGCTGTTAAAATATTCTTGCGGATGCCCATTCGCAATGTGGTCTCATGGACTGCCATAATATCTGGTTTTGTGCAGAAGAATGATTACTTAATGGCCCTCAAGTTTTTCAAAGATATGAGAAAATTGGGGGAGGAAATCAATAGCTATACAGTCACTAGCGTGTTAACTGCATGTGCTAATCCAGCCATGACAAAAGAAGCAATCCAACTCCACTCCTGGATTTTAAGAGCTGGTTTTTCATCTCATGCGGTGGTGGGAGCTGCTTTAATTAACATGTATTCGAAAATAGGAGCTATTGATCTTTCTATGACTGTTTTCGGAGAGATGGACAATAAAAGGAATCTCAGTTCTTGGACAGCTATGATTACCTCATTTGCACAGAACAATGATAAAGAGAAAGCAAGTGAATTGTTCCAAAAAATGTTACGTGAAAGTATGGGACCAGATACATTTTGCACCTCTAGTGTCTTGAGTGTGACCGACTGTATTACCTTTGGGAGACAGATTCACTGCTTCACGCATAAAACTGGATTAATATTTGACATTTCTGTCGGCAGTGCTCTTTTCACAATGTATTCCAAATGTGGCTATCTAGAGGAAGCTTTTCATATCTCAGAAAAACTTGTGGGACAAGCTGAGTCCAGAAGGAAGGCTCTTGAAGACAGGAATGCAAGCAACAGACATCGTGACTTCCTGATCAGGCTGGATACCGGAAGTGACTCAAATTGA 1485 40.67 LLSDYVKSRKCSLRNTKVLHAKLLRATLLHSNIYVSNSLLDCYSKSNSLDHALKLFDTMLHPNVISWNILISSFNHNFMYLDSWRTFCRMHFLGFEPSEITYGSVLSACAAIQAPMFGKQVYSLAVRNGFFVNGYVRAGMIDLFAKDSSFLDALRVFHDVDCENVVCWNAIVSAAVRNGENFMALDLYNTMCHGFLEPNSFTFSSVLTACAALEHPEFGKRVQGKVIKCGGEDVFVETALIDLYSKCGEMDEAVKIFLRMPIRNVVSWTAIISGFVQKNDYLMALKFFKDMRKLGEEINSYTVTSVLTACANPAMTKEAIQLHSWILRAGFSSHAVVGAALINMYSKIGAIDLSMTVFGEMDNKRNLSSWTAMITSFAQNNDKEKASELFQKMLRESMGPDTFCTSSVLSVTDCITFGRQIHCFTHKTGLIFDISVGSALFTMYSKCGYLEEAFHISEKLVGQAESRRKALEDRNASNRHRDFLIRLDTGSDSN 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 123242 126262 + Cp4.1LG20g00240.1 Cpe20g00022 486651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00022 494 PANTHER OS07G0578800 PROTEIN-RELATED 415 458 IPR045215 GO:0003723|GO:0009451
Cpe20g00022 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Cpe20g00022 494 PANTHER OS09G0413300 PROTEIN 321 412 - -
Cpe20g00022 494 PANTHER OS09G0413300 PROTEIN 23 318 - -
Cpe20g00022 494 PANTHER OS09G0413300 PROTEIN 415 458 - -
Cpe20g00022 494 Pfam PPR repeat family 164 211 IPR002885 -
Cpe20g00022 494 Pfam PPR repeat family 263 312 IPR002885 -
Cpe20g00022 494 Pfam PPR repeat family 62 110 IPR002885 -
Cpe20g00022 494 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Cpe20g00022 494 TIGRFAM PPR: pentatricopeptide repeat domain 369 402 IPR002885 -
Cpe20g00022 494 TIGRFAM PPR: pentatricopeptide repeat domain 238 264 IPR002885 -
Cpe20g00022 494 TIGRFAM PPR: pentatricopeptide repeat domain 37 60 IPR002885 -
Cpe20g00022 494 TIGRFAM PPR: pentatricopeptide repeat domain 65 99 IPR002885 -
Cpe20g00022 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 263 IPR002885 -
Cpe20g00022 494 PANTHER OS07G0578800 PROTEIN-RELATED 321 412 IPR045215 GO:0003723|GO:0009451
Cpe20g00022 494 PANTHER OS07G0578800 PROTEIN-RELATED 23 318 IPR045215 GO:0003723|GO:0009451
Cpe20g00022 494 Gene3D Tetratricopeptide repeat domain 316 419 IPR011990 GO:0005515
Cpe20g00022 494 Gene3D Tetratricopeptide repeat domain 230 315 IPR011990 GO:0005515
Cpe20g00022 494 Gene3D Tetratricopeptide repeat domain 119 223 IPR011990 GO:0005515
Cpe20g00022 494 Gene3D Tetratricopeptide repeat domain 4 118 IPR011990 GO:0005515
Cpe20g00022 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Cpe20g00022 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 32 66 IPR002885 -
Cpe20g00022 494 Pfam PPR repeat 369 396 IPR002885 -
Cpe20g00022 494 Pfam PPR repeat 340 364 IPR002885 -
Cpe20g00022 494 Pfam PPR repeat 37 60 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00022 - - - bhj:120082449 837.025
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00022 Cpe-Chr20:123242 Cpe12g01030 Cpe-Chr12:8591984 5.64E-45 dispersed
Cpe20g00022 Cpe-Chr20:123242 Cpe03g00167 Cpe-Chr3:835756 1.67E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g545 . Blo16g00187 . . . Bpe13g00289 Bma06g00176 . Cmo13g01182 . . . . . . Cpe20g00022 . . . . . . . . . . . . . . . . . . . . Csa01g00539 Chy12g01549 . . . . . . . . . . . . Cma13g01128 . Car13g00963 . . . . . . . . . . Cla04g01204 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012059 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 2 1 1 1 0 1 26