Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00025 ATGGACAGTGAGTGCAAAACCCATCTTCCCAAGGTTTTCATCTCTTCATATCTTGAACACCATCAACTTCCTTCTGCTATCACCTCAAACCAAAACCCTTCCTTCTCCAAAAACATGAAGAAGACGACCATCACTGCAGAAGAAGAGATTGGAGTGTTCAGAGCTGAAAGGTACTATGGCATGAAACTGGAAGATGACAGCACAAGAGTTGTTGAGAATTGTGGTAGCAACCAGGCAAAGAAGAAAGAACAACGACCTGATGTGCAGTCCAGGAGACAAAAGAGCAGACCAGGAGCTCCAAGTGTGTCTTCTGAATCAAGTTGGAACAGCCAAGCTACCTTTTCATCTCAGAACACCCAAAATAAGACAAAAGGAAGAAGCCTGCTGGTCAACCTTACCTGCAACAGGTCCTGTTCTGATAAAAAATCTATTCTTGTCCATAGGAATATGTATGACCAAAGAGGATTGCAAGGCAGTGATGTCAGAAAAGAAGCTTCCAGGAACGAACAAATTCCTGTCATCGTGGATGCCAGAATCAAGTTTCAAACAGTGAATTTTGTAAAACAAAAACCAAAAAGTTCAATTTCAGGTGGGTCAACTAGAGAAGAAGAGATTATATTTCCAGTTTCAAGCTCTCAGTTGCAAAACTTTTCAAAGATCAAGGATGAAGATCCTAGAAAATCCATTGAAGTATTCGGCTCAAACAAGTTGGATAAGGAAGACTTAGTGGCTAAGAATCTAGAGAGGAAGCTGTCTGTTCTAAAATGGGATGCCATTCCAAAAGCTAAGGCCACTCAAACTGCTCCAAGAACCGATCCAATGATTGAAGATATAGGGAGCGATGCAAGTTCCGATCTGTTCGAGATCGAAAACTTATCTGGAAGCAATGGAAAGCCATTCACAAGACAGACTTCAGATGTTATACCAAGCTCCATGACAGCTTATGAGCCAAGTGAAGGCAGCATTGAGTGGAGTGCAGTCACTGCCAGTGCAGCTGATTTCTCATCTGTTGCAGACTATGATGAAAAGAAAGTCACAGCCAGGACTAAAGCCACGGTATTGGACAAGGATTTGCACAAAAGTCACCCTACTGGACTGTTAGGCTGCAAAAGTCACAAGTCAGTCAGCATAGCTGAACCTGCATACAGAAATATCGATAAGTTGAATTCTGATTCTAGACGTTTCCCAAGATTGGACTCAACCATGATGGCTAGTAACGCGACAGGCTGA 1230 42.52 MDSECKTHLPKVFISSYLEHHQLPSAITSNQNPSFSKNMKKTTITAEEEIGVFRAERYYGMKLEDDSTRVVENCGSNQAKKKEQRPDVQSRRQKSRPGAPSVSSESSWNSQATFSSQNTQNKTKGRSLLVNLTCNRSCSDKKSILVHRNMYDQRGLQGSDVRKEASRNEQIPVIVDARIKFQTVNFVKQKPKSSISGGSTREEEIIFPVSSSQLQNFSKIKDEDPRKSIEVFGSNKLDKEDLVAKNLERKLSVLKWDAIPKAKATQTAPRTDPMIEDIGSDASSDLFEIENLSGSNGKPFTRQTSDVIPSSMTAYEPSEGSIEWSAVTASAADFSSVADYDEKKVTARTKATVLDKDLHKSHPTGLLGCKSHKSVSIAEPAYRNIDKLNSDSRRFPRLDSTMMASNATG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 134287 135516 + Cp4.1LG20g00110.1 Cpe20g00025 486654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00025 409 MobiDBLite consensus disorder prediction 76 92 - -
Cpe20g00025 409 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 3 2 403 IPR039819 -
Cpe20g00025 409 MobiDBLite consensus disorder prediction 94 122 - -
Cpe20g00025 409 MobiDBLite consensus disorder prediction 70 122 - -
Cpe20g00025 409 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 2 403 IPR039615 GO:0009638
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00025 - - - bhj:120082468 681.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01354 Cpe-Chr2:11950995 Cpe20g00025 Cpe-Chr20:134287 2.36E-18 dispersed
Cpe08g01371 Cpe-Chr8:9853283 Cpe20g00025 Cpe-Chr20:134287 3.84E-09 transposed
Cpe01g01461 Cpe-Chr1:8753054 Cpe20g00025 Cpe-Chr20:134287 1.68E-24 wgd
Cpe02g01065 Cpe-Chr2:9758355 Cpe20g00025 Cpe-Chr20:134287 0 wgd
Cpe20g00025 Cpe-Chr20:134287 Cpe09g00173 Cpe-Chr9:1015571 9.17E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g539 Blo04g00769 . . . . Bpe13g00286 . . Cmo13g01179 . . . . . . Cpe20g00025 . . . . . . . . . . . . . . . . . . . Lsi02g00066 Csa01g00538 Chy12g01550 Cme12g02004 . . . Bda14g00848 . Bpe15g00603 . . . . . . . Car13g00960 . . . . . . . . . . Cla04g01205 Cam04g1271 Cec01g1779 Cco01g1826 Clacu04g1299 Cmu04g1275 Cre01g1565 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008262 1 1 3 0 2 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00025 Cpe_Chr20 FPKM 16.565977 17.150484 20.841524 23.128304 19.920546 22.176779 20.982416 27.742311 25.003639 26.795176