Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00029 ATGGAAGGAAGTGACCAAATTCAGTATCATCATCGTCCGCCTACTTCGTTTCCTCTCCAATTGTTAGAGAAGAAGGAATACGATCCCCAGCCTCCTCCCGAGTCCTCTAAGAAGCCCTCGCCCAAGAGGACCTCCACCAAAGACCGCCACACCAAAGTCGATGGCCGCGGCCGCCGTACCCGGATGCCTGCGCTTTGTGCTGCTAGAGTTTTCCAGCTCACCCGTGAGCTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTTCTTCAACAGGCCGAGCCTGCTGTTATTGCTGCCACTGGTACCGGCACAATTCCGGCAAACTTTAACTCCCTCAATACCTCCTTGAGAAGATCGGCCACCAGCATTTCTTTACCTTCTCAACTAAGATCCTCATCTTACTATCACCCCGGAGTGATGGCGTTCAACTCTCAACCAATGAATATGGGTCCAATGACGCATGCAAAAGAAGATCACTTGCCTGACCCGCAGCGGAGCTATGTGCAGCAATCCACCACAGGGCTACTCCCGACGACTATTCCGGCCAACTTTTGGATGTTCTCCGATGGCAACAGCCAATTACTCAGCGGCGGAGGTGACTCTCTATGGAGGCTTCCACCGGCCAACCAAGACAACGCTTTATACAGAGGACAAGCCTCCGGTAGTGTTCGTTTCTCGAATCTGGCTGCTCCATTGACGCTTCTCCCCGGAAAGCCATTGGGTCCCAGTGGCAGCGGTGGAAGCATGCACGATGGACATCTGAATATCTACGGCGGCCAAAATCGGGCGCATGGGGCGGCTCCGGACAACAGTGTCTCATAA 825 54.3 MEGSDQIQYHHRPPTSFPLQLLEKKEYDPQPPPESSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMAFNSQPMNMGPMTHAKEDHLPDPQRSYVQQSTTGLLPTTIPANFWMFSDGNSQLLSGGGDSLWRLPPANQDNALYRGQASGSVRFSNLAAPLTLLPGKPLGPSGSGGSMHDGHLNIYGGQNRAHGAAPDNSVS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 145294 150254 + Cp4.1LG20g00130.1 Cpe20g00029 486658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00029 274 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Cpe20g00029 274 PANTHER TRANSCRIPTION FACTOR TCP23 29 147 - -
Cpe20g00029 274 PANTHER TRANSCRIPTION FACTOR TCP23 167 263 - -
Cpe20g00029 274 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 147 IPR005333 GO:0003700
Cpe20g00029 274 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 167 263 IPR005333 GO:0003700
Cpe20g00029 274 MobiDBLite consensus disorder prediction 1 60 - -
Cpe20g00029 274 MobiDBLite consensus disorder prediction 40 59 - -
Cpe20g00029 274 Pfam TCP family transcription factor 44 144 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00029 - - - csv:101218047 338.191
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe18g00799 Cpe20g00029 CCT
Cpe18g00799 Cpe20g00029 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00495 Cpe-Chr9:3289850 Cpe20g00029 Cpe-Chr20:145294 1.64E-42 dispersed
Cpe13g00517 Cpe-Chr13:5277063 Cpe20g00029 Cpe-Chr20:145294 2.43E-37 dispersed
Cpe14g00133 Cpe-Chr14:712203 Cpe20g00029 Cpe-Chr20:145294 4.69E-32 dispersed
Cpe17g00328 Cpe-Chr17:2239411 Cpe20g00029 Cpe-Chr20:145294 7.05E-38 dispersed
Cpe17g00923 Cpe-Chr17:7142019 Cpe20g00029 Cpe-Chr20:145294 1.26E-38 dispersed
Cpe19g00421 Cpe-Chr19:3820926 Cpe20g00029 Cpe-Chr20:145294 2.00E-34 dispersed
Cpe01g01458 Cpe-Chr1:8738376 Cpe20g00029 Cpe-Chr20:145294 3.55E-43 wgd
Cpe18g00799 Cpe-Chr18:7484052 Cpe20g00029 Cpe-Chr20:145294 1.44E-17 wgd
Cpe20g00029 Cpe-Chr20:145294 Cpe04g01504 Cpe-Chr4:11883435 4.33E-32 wgd
Cpe20g00029 Cpe-Chr20:145294 Cpe04g01504 Cpe-Chr4:11883435 4.33E-32 wgd
Cpe20g00029 Cpe-Chr20:145294 Cpe09g00170 Cpe-Chr9:997754 5.77E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01152 . 36 250 TCP Transcription Factor Family AT5G23280 62.7 3.3e-64 242.3
Cpe09g00495 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 2.1e-58 223.0
Cpe20g00029 CCT,ECH 35 134 TCP Transcription Factor Family AT3G47620 83.0 2.5e-39 160.6
Cpe04g00477 . 33 276 TCP Transcription Factor Family AT3G27010 55.5 5.1e-54 208.8
Cpe01g01152 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 9.6e-61 230.7
Cpe09g00495 . 10 228 TCP Transcription Factor Family AT5G08330 57.0 8.1e-60 227.6
Cpe13g00517 . 1 103 TCP Transcription Factor Family AT5G08330 82.7 3.0e-38 156.0
Cpe04g01456 CCT,CST 31 177 TCP Transcription Factor Family AT5G60970 56.1 2.0e-38 157.1
Cpe03g00977 . 53 164 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51085 PF03634 TCP 1.30E-35 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00029 Cpe_Chr20 FPKM 41.098106 49.862095 113.588104 109.241776 25.859774 25.543003 22.559416 117.474731 131.449417 107.804253