Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe20g00029 | ATGGAAGGAAGTGACCAAATTCAGTATCATCATCGTCCGCCTACTTCGTTTCCTCTCCAATTGTTAGAGAAGAAGGAATACGATCCCCAGCCTCCTCCCGAGTCCTCTAAGAAGCCCTCGCCCAAGAGGACCTCCACCAAAGACCGCCACACCAAAGTCGATGGCCGCGGCCGCCGTACCCGGATGCCTGCGCTTTGTGCTGCTAGAGTTTTCCAGCTCACCCGTGAGCTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTTCTTCAACAGGCCGAGCCTGCTGTTATTGCTGCCACTGGTACCGGCACAATTCCGGCAAACTTTAACTCCCTCAATACCTCCTTGAGAAGATCGGCCACCAGCATTTCTTTACCTTCTCAACTAAGATCCTCATCTTACTATCACCCCGGAGTGATGGCGTTCAACTCTCAACCAATGAATATGGGTCCAATGACGCATGCAAAAGAAGATCACTTGCCTGACCCGCAGCGGAGCTATGTGCAGCAATCCACCACAGGGCTACTCCCGACGACTATTCCGGCCAACTTTTGGATGTTCTCCGATGGCAACAGCCAATTACTCAGCGGCGGAGGTGACTCTCTATGGAGGCTTCCACCGGCCAACCAAGACAACGCTTTATACAGAGGACAAGCCTCCGGTAGTGTTCGTTTCTCGAATCTGGCTGCTCCATTGACGCTTCTCCCCGGAAAGCCATTGGGTCCCAGTGGCAGCGGTGGAAGCATGCACGATGGACATCTGAATATCTACGGCGGCCAAAATCGGGCGCATGGGGCGGCTCCGGACAACAGTGTCTCATAA | 825 | 54.3 | MEGSDQIQYHHRPPTSFPLQLLEKKEYDPQPPPESSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMAFNSQPMNMGPMTHAKEDHLPDPQRSYVQQSTTGLLPTTIPANFWMFSDGNSQLLSGGGDSLWRLPPANQDNALYRGQASGSVRFSNLAAPLTLLPGKPLGPSGSGGSMHDGHLNIYGGQNRAHGAAPDNSVS | 274 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 145294 | 150254 | + | Cp4.1LG20g00130.1 | Cpe20g00029 | 486658 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe20g00029 | 274 | ProSiteProfiles | TCP domain profile. | 46 | 100 | IPR017887 | - | |
| Cpe20g00029 | 274 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 29 | 147 | - | - | |
| Cpe20g00029 | 274 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 167 | 263 | - | - | |
| Cpe20g00029 | 274 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 29 | 147 | IPR005333 | GO:0003700 | |
| Cpe20g00029 | 274 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 167 | 263 | IPR005333 | GO:0003700 | |
| Cpe20g00029 | 274 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Cpe20g00029 | 274 | MobiDBLite | consensus disorder prediction | 40 | 59 | - | - | |
| Cpe20g00029 | 274 | Pfam | TCP family transcription factor | 44 | 144 | IPR017887 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe18g00799 | Cpe20g00029 | CCT | |
| Cpe18g00799 | Cpe20g00029 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe09g00495 | Cpe-Chr9:3289850 | Cpe20g00029 | Cpe-Chr20:145294 | 1.64E-42 | dispersed | |
| Cpe13g00517 | Cpe-Chr13:5277063 | Cpe20g00029 | Cpe-Chr20:145294 | 2.43E-37 | dispersed | |
| Cpe14g00133 | Cpe-Chr14:712203 | Cpe20g00029 | Cpe-Chr20:145294 | 4.69E-32 | dispersed | |
| Cpe17g00328 | Cpe-Chr17:2239411 | Cpe20g00029 | Cpe-Chr20:145294 | 7.05E-38 | dispersed | |
| Cpe17g00923 | Cpe-Chr17:7142019 | Cpe20g00029 | Cpe-Chr20:145294 | 1.26E-38 | dispersed | |
| Cpe19g00421 | Cpe-Chr19:3820926 | Cpe20g00029 | Cpe-Chr20:145294 | 2.00E-34 | dispersed | |
| Cpe01g01458 | Cpe-Chr1:8738376 | Cpe20g00029 | Cpe-Chr20:145294 | 3.55E-43 | wgd | |
| Cpe18g00799 | Cpe-Chr18:7484052 | Cpe20g00029 | Cpe-Chr20:145294 | 1.44E-17 | wgd | |
| Cpe20g00029 | Cpe-Chr20:145294 | Cpe04g01504 | Cpe-Chr4:11883435 | 4.33E-32 | wgd | |
| Cpe20g00029 | Cpe-Chr20:145294 | Cpe04g01504 | Cpe-Chr4:11883435 | 4.33E-32 | wgd | |
| Cpe20g00029 | Cpe-Chr20:145294 | Cpe09g00170 | Cpe-Chr9:997754 | 5.77E-06 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51085 | PF03634 | TCP | 1.30E-35 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe20g00029 | - | - | csv:101218047 | 338.191 |