Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00036 ATGGAAGCCCTTCTTCTTCCCTACGAAATTCACCCCCACTCCGTCGCCAAGGATCGGAGACCAGAGTTCCAGGAGCTGCCGGAACCGGACATCCATATCCTTACCTCCGGTGGACTTCGGATACCTGTGCATTCCACTATTCTGGCATCAGTTTCATCGGTGCTGGAAAACATCATCAACCAACCGCAAAAGCACCGGAGCTCCGAGAAAGTGGTTCAAATTCTTGGCGTTCCGTGCGAGGCAGTCGTTTCGTTCGTTCAATTTCTCTACACATCTAGGTGCACTGAAGAATATCTGAGGAAATATGGAATTCATCTATTGGCGCTATCGCACGTTTACCTCGTTCCGCATCTGAAGAAGCGATGCAGCAAGCACTTGGCTCGAAAATTGACGATCGACAGCGTTATTGATGTACTCCAACTCGCAAGAATGTGCGATGCACCAGATCTCTCACTCAGCTGTATGAAAATGGTGTCGAGCCACTACAAGGCCGTCCAGAAAACGGAGGGCTGGAAATTCCTGCAAGAACATGACCCTTGGCTGGAGCTTCAAATTCTGCAGTTCATGGAAGAATCCGAATTGAGGAAAAAGAGATGCAGAAGGCAGAGGAAGGAGCAGAGGGTGTATCTTCAGCTAAGCGACGCAATGGAGTGCTTAGAGCACATCTGCAAAGAAGGGTGCACAAACGTTGGGCCGCGCGACGTGGAACCCACAAAGAAGCCCTGCGCCAAATTCTCGACGTGTCATGGGGTTCAGCTTCTGATTAAGCACTTTGCAACGTGTGCGAAGAGAGTCCACGGAGGAGCCTGCTGGCGGTGCAAACGCATGTGGCAGCTTCTACGCTTGCATGCCTCCATCTGCGACCAATCCGACGCTTGCAAAGTCCCTCTTTGCAGGCAATTCAAGCTAAAAATGGAGCAAGAGAAGGATGGAAAAGAGGATTCGAAGTGGAAGATGCTGGTGAAAAAGGTGGTGTCTGCGAAAACCATTTCCTCTCTCGGTCTTCCCAAAAGGAAGAGAGCGGCAGCAGCAGGGGACACCACGAGCGGCGACCGCATCAGAAGCTTCAGATTACAATGTGTGGAACCAAATGGATGGGTGTTATGA 1107 50.86 MEALLLPYEIHPHSVAKDRRPEFQELPEPDIHILTSGGLRIPVHSTILASVSSVLENIINQPQKHRSSEKVVQILGVPCEAVVSFVQFLYTSRCTEEYLRKYGIHLLALSHVYLVPHLKKRCSKHLARKLTIDSVIDVLQLARMCDAPDLSLSCMKMVSSHYKAVQKTEGWKFLQEHDPWLELQILQFMEESELRKKRCRRQRKEQRVYLQLSDAMECLEHICKEGCTNVGPRDVEPTKKPCAKFSTCHGVQLLIKHFATCAKRVHGGACWRCKRMWQLLRLHASICDQSDACKVPLCRQFKLKMEQEKDGKEDSKWKMLVKKVVSAKTISSLGLPKRKRAAAAGDTTSGDRIRSFRLQCVEPNGWVL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 166532 169641 + Cp4.1LG20g00190.1 Cpe20g00036 486665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00036 368 Gene3D - 130 203 - -
Cpe20g00036 368 Gene3D Potassium Channel Kv1.1; Chain A 22 129 IPR011333 -
Cpe20g00036 368 Pfam TAZ zinc finger 213 298 IPR000197 -
Cpe20g00036 368 SMART TAZ_2 206 299 IPR000197 -
Cpe20g00036 368 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 22 348 IPR044513 -
Cpe20g00036 368 SMART BTB_4 29 130 IPR000210 GO:0005515
Cpe20g00036 368 Gene3D TAZ domain 204 327 IPR035898 -
Cpe20g00036 368 SUPERFAMILY POZ domain 29 129 IPR011333 -
Cpe20g00036 368 SUPERFAMILY TAZ domain 205 307 IPR035898 -
Cpe20g00036 368 ProSiteProfiles BTB domain profile. 29 93 IPR000210 GO:0005515
Cpe20g00036 368 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 22 348 - -
Cpe20g00036 368 Pfam BTB/POZ domain 29 129 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00036 - - - bhj:120082700 642.884
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01058 Cpe20g00036 CCT
Cpe09g01058 Cpe20g00036 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00953 Cpe-Chr2:8172295 Cpe20g00036 Cpe-Chr20:166532 0 dispersed
Cpe13g01051 Cpe-Chr13:8558967 Cpe20g00036 Cpe-Chr20:166532 4.54E-12 dispersed
Cpe19g00666 Cpe-Chr19:5326294 Cpe20g00036 Cpe-Chr20:166532 3.33E-32 dispersed
Cpe20g00036 Cpe-Chr20:166532 Cpe20g00340 Cpe-Chr20:1924872 8.79E-151 dispersed
Cpe20g00036 Cpe-Chr20:166532 Cpe09g00993 Cpe-Chr9:8801639 9.16E-161 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g479 . . . . . Bpe13g00269 Bma06g00190 . Cmo13g00945 Cmo18g00105 . . . . . Cpe20g00036 . . . . . . . . . . . . . . . Cone2ag0871 Cone16ag0139 . . Lsi02g00328 Csa01g00802 Chy12g01314 Cme12g01738 . . Bda11g01682 Bda14g00833 . Bpe15g00618 Bma03g00807 . Sed08g2562 . . Cma13g00921 Cma18g00134 Car13g00759 Car18g00126 Cpe09g01058 . Bhi08g01429 Tan05g2068 . Lac10g0392 . . . Cla01g01414 Cam01g1480 Cec01g1519 Cco01g1565 Clacu01g1503 Cmu01g1396 Cre01g1316 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51087 PF00651 BTB 8.40E-13 CL0033 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00036 Cpe_Chr20 FPKM 5.582668 4.376889 4.298819 3.727963 11.020396 11.539811 11.956285 3.726141 4.266369 3.986197