Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00041 CACAGCAGCAACGATCAACCAAAAATGGGCGCCACCCAACTCTTTGTTCTGTCTCTTATTTCCCTTACTCTCCTCTCCGCAGTTTCTTATTCAGAAGGCAATGGGTTGAAGATGAACGCCATTGACAGATGCTGGAGATCGAACCCGTACTGGAGGAGAAACAGGCAACAACTGGGCGTTTGCTCGGTGGGTTTCGTTGGAAAAATGACCAACAACGTCGGAAGAAATCTCATACGCTACCAAGTCACCGACCCTAGCGACGACCCTATAAATCCACGCCCAGGTACACTCCGATACGGCGCCACAATGATGAAGTCCAAAGTCTGGATCACCTTCCAAAAAGACATGCACATCCTTCTCCACAAGCCGCTTCTCATAAGCAGCTACACAGCCATCGACGGGCGAGGGGCCAGCGTCCACATCTCCGGGAATGCATGCCTGGTGGTCTCCAAGGCCACCAACATCATTATCCACGGCCTTATCATTCACCACTGCAAGGCTCAGGGCGCAGGCCAAGTCATGGGCCCTAATTCCAAGTTGGTTTCACTCGGACACGTGGACGGCGATGCCATTCGTTTAGTTTCAGCCTCCAAAGTCTGGATTGACCACAACACACTGTACCGTTGCGAGGATGGGCTTCTCGACGTCACCAGAGGCTCCACTGACATCACCATTTCCAACAATTGGTTCCGCGACCAAGACAAGGTTATTCTTCTCGGCCACGAGGACGGCTATGTCCGAGACATGAACATGAGAGTCACTGTGGTCTATAACCATTTTGGACCCAACTGCAACCAAAGGATGCCCAGGATCCGGCATGGGTATGCGCACGTGGCGAACAATTTGTACCAAGGATGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCATTGTATGGAGCACCGGGAAAGTAGAGGCGGCAAAATGGAAGTTTCATTCCGTAAGAGACGTTTTTGAAAACGGAGCTTCCTTTGGACAGATAGGTGTGGGGCGAGGAGGCGTAAAGCCAAATTACAGCGCCCAGCAGCGGTTTCCAGTGGCTGATGCTAAGTGGGTGAGATCATTGACAAGCTCCTCGGGGGCTCTACGCTGCTCGTCAAAATCAAGATGTTGA 1119 51.83 HSSNDQPKMGATQLFVLSLISLTLLSAVSYSEGNGLKMNAIDRCWRSNPYWRRNRQQLGVCSVGFVGKMTNNVGRNLIRYQVTDPSDDPINPRPGTLRYGATMMKSKVWITFQKDMHILLHKPLLISSYTAIDGRGASVHISGNACLVVSKATNIIIHGLIIHHCKAQGAGQVMGPNSKLVSLGHVDGDAIRLVSASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHEDGYVRDMNMRVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWTQYAIGGSMNPSIVWSTGKVEAAKWKFHSVRDVFENGASFGQIGVGRGGVKPNYSAQQRFPVADAKWVRSLTSSSGALRCSSKSRC 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 184730 186118 - Cp4.1LG20g00270.1 Cpe20g00041 486670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00041 372 Gene3D - 38 365 IPR012334 -
Cpe20g00041 372 PANTHER PECTATE LYASE 20 369 - -
Cpe20g00041 372 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cpe20g00041 372 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Cpe20g00041 372 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cpe20g00041 372 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Cpe20g00041 372 PRINTS Pollen allergen Amb family signature 86 111 IPR018082 -
Cpe20g00041 372 Pfam Pectate lyase 128 296 IPR002022 -
Cpe20g00041 372 PANTHER PECTATE LYASE 18-RELATED 20 369 IPR045032 GO:0030570
Cpe20g00041 372 SMART amb_all 115 312 IPR002022 -
Cpe20g00041 372 SUPERFAMILY Pectin lyase-like 38 363 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00041 Cpe-Chr20:184730 Cpe20g00339 Cpe-Chr20:1918062 4.72E-89 dispersed
Cpe02g01079 Cpe-Chr2:9910324 Cpe20g00041 Cpe-Chr20:184730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00041 K01728 - csv:101217103 620.928