Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00042 ATGGGGAGGAAGAAGAAAACTGACGGTGGTGGTGAAAGTTCTGAGTCTCAGGATGTTGGTGGTCGTGGCTCCCAACGATCAGCTGAAAGGAGAGATGGTCCACAGCAACACGGTGGCAGTGGATATCATGGTGGAAGAGGTTGGGCTTCTCAAGGGGGACGGGGAGGTCAAGGTGGTGGTCGTGGCCGAGGAACATCTCAACATCAGCACTACGGAGGACCTCCGGATTACCAAGGCAGGGGTAGAGGTGGGCCATATCAGCATGGAGGACGCGGTAACTATGGTGGTAATCGCAGTGGCATTGGGGGAGGATCTTCTTCTGGTGGACCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCAATGTCATCTCTGGCGAGTTCTTCCTCCCACCCACCCGATACATCATCAATTGATCAACAATTTCAACAAATTTCCATCCAGCAGGAATCTTCTCAAAGCCAAGCAATTCAACCTGCACCACCATCTAGTAAATCTATGAGATTCCCTTTGAGACCAGGAATGGGTAGCTCTGGCATAAGGTGTATTGTTAAGGCTAACCACTTCTTTGCTGAGCTGCCGGACAAAGATCTTCATCAGTATGATGTTACTATCACTCCAGAAGTCACTTCACGTGTCTATAATCGAGCTGTAATGCAACAGCTAGTGAACTTATACAGGGTCTCTCACCTTGGTAATCGTCTTCCAGCCTATGATGGAAGGAAAAGTTTATACACAGCTGGTCCTCTTCCTTTCATTTCAAATGAGTTTAGAATCACTCTTTTTGATGAAGAGGATGGATCAGGAGGACAAAGACAGGAAAGAGAATTTAAAGTTGTGATCAAATTGGCTGCTCGTGCTGATTTGCACCATTTAGGGCTCTTTCTGCAGGGCAGACAGGCGGATGCCCCACAGGAAGCCCTTCAAGTTCTGGATATTGTATTGCGCGAATTGCCTACTTCAAGGCATGTCTATATTACTACACACCTGTATTGTCCAGTGGGCCGATCATTTTATTCTCCTGACCTTGGCAGACGTCAGACAATGGGTGAGGGGCTGGAAAGCTGGCGGGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGCCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAACCTTTGCCTGTCATTGATTTTGTGACTCAGCTTCTCAACCGTGATGTGTCATCGAGACCATTATCTGACGCTGACCGTGTGAAGATAAAGAAGGCTCTTCGAGGTGTTAAAGTTGAAGTGACACACCGTGGTAATATGCGCAGAAAATATCGCATAACTGGTTTGACATCACAAGCAACACGAGAGCTAACTTTCCCGGTTGATGAAAGAGGTACTATGAAATCAGTGGTCGAGTACTTCTATGAAACATATGGGTTTGTTATACAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTTCCCATGGAAGTTTGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAGATAACTGCTCTGCTCAAGGTTACATGCCAACGACCAAAAGATAGAGAGGAAGACATTATGCGGACGGTACGTCATAATGCATATCATGACGATCCATATGCACAGGAGTTTGGAATTAATATAAGTGCTAGGCTTGCGTCTGTTGAAGCTCGTATTCTTCCTGCACCATGGCTAAAATATCATGAGACCGGCAGAGAAAAGGATTGCTTGCCACAGGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGCATAAATTTCTCTCGATATGTGCAAGACAGCGTTACTCGTGGATTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGATTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGAATCTGTGAAACGGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGTAAACAGTATTTGGCCAATGTGGCCTTGAAAATAAACGTAAAGGTTGGGGGAAGAAATACAGTACTTGTTGATGCATTATCTAGGCGCATACCCTTGGTTAGTGACCGCCCTACCATTATATTTGGTGCCGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATCCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGGGGGACTGTAACGGGTGGAATGGTCAAGGATGGGGTTAGCGAAGGACAGTTTTACCAAGTTTTATTGCATGAGCTGGATGCAATTCGAAAGGCATGCGCTTCTCTAGAACCAAACTACCAACCTCCAGTGACTTTCGTTGTTGTACAGAAGCGTCATCACACTAGGTTATTTGCTAATAACCATTCTGATCGCCACGCTGTTGACAAGAGTGGGAACATATTGCCTGGTACGGTCGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCAGCTCACTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGACAGATTGCAGACTCTAACCAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCTATTGTGCCCCCAGCCTACTACGCTCATCTTGCTGCATTCCGAGCTCGTTTCTATATGGAACCCGAGACTTCTGATAGCGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGTGGTGGTGGTGGTGGTGGTCGCAGCACACGGGCACCAGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTCAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3123 45.98 MGRKKKTDGGGESSESQDVGGRGSQRSAERRDGPQQHGGSGYHGGRGWASQGGRGGQGGGRGRGTSQHQHYGGPPDYQGRGRGGPYQHGGRGNYGGNRSGIGGGSSSGGPSRPPVPELHQATPVYQGGVTQPMSSLASSSSHPPDTSSIDQQFQQISIQQESSQSQAIQPAPPSSKSMRFPLRPGMGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMQQLVNLYRVSHLGNRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRQEREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRHVYITTHLYCPVGRSFYSPDLGRRQTMGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRITGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMRTVRHNAYHDDPYAQEFGINISARLASVEARILPAPWLKYHETGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVIPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMVKDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADRLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGGGGGGGRSTRAPGLNAAVRPLPALKENVKRVMFYC 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 188486 195764 + Cp4.1LG20g00430.1 Cpe20g00042 486671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00042 1040 Pfam Argonaute linker 2 domain 536 582 IPR032472 -
Cpe20g00042 1040 MobiDBLite consensus disorder prediction 990 1019 - -
Cpe20g00042 1040 Pfam N-terminal domain of argonaute 193 326 IPR032474 -
Cpe20g00042 1040 Pfam Mid domain of argonaute 593 668 IPR032473 -
Cpe20g00042 1040 ProSiteProfiles PAZ domain profile. 396 510 IPR003100 GO:0005515
Cpe20g00042 1040 CDD Piwi_ago-like 554 985 IPR045246 -
Cpe20g00042 1040 Pfam PAZ domain 400 525 IPR003100 GO:0005515
Cpe20g00042 1040 SUPERFAMILY Ribonuclease H-like 681 986 IPR012337 -
Cpe20g00042 1040 SMART Piwi_a_2 686 986 IPR003165 GO:0003676
Cpe20g00042 1040 MobiDBLite consensus disorder prediction 1 183 - -
Cpe20g00042 1040 ProSiteProfiles Piwi domain profile. 686 986 IPR003165 GO:0003676
Cpe20g00042 1040 Pfam Glycine-rich region of argonaut 72 173 IPR024357 -
Cpe20g00042 1040 Pfam Argonaute linker 1 domain 344 394 IPR014811 -
Cpe20g00042 1040 CDD PAZ_argonaute_like 395 509 - -
Cpe20g00042 1040 MobiDBLite consensus disorder prediction 124 173 - -
Cpe20g00042 1040 Gene3D paz domain 389 514 - -
Cpe20g00042 1040 Gene3D - 574 749 - -
Cpe20g00042 1040 SMART DUF1785_2 343 395 IPR014811 -
Cpe20g00042 1040 PANTHER PROTEIN ARGONAUTE 1A 80 1039 - -
Cpe20g00042 1040 SMART PAZ_2_a_3 400 532 IPR003100 GO:0005515
Cpe20g00042 1040 SUPERFAMILY PAZ domain 390 550 IPR036085 GO:0005515
Cpe20g00042 1040 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 80 1039 - -
Cpe20g00042 1040 Pfam Piwi domain 687 985 IPR003165 GO:0003676
Cpe20g00042 1040 Gene3D - 755 1040 IPR036397 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01473 Cpe-Chr3:11678135 Cpe20g00042 Cpe-Chr20:188486 0 dispersed
Cpe04g01153 Cpe-Chr4:9878341 Cpe20g00042 Cpe-Chr20:188486 0 dispersed
Cpe08g00291 Cpe-Chr8:1866829 Cpe20g00042 Cpe-Chr20:188486 0 dispersed
Cpe20g00042 Cpe-Chr20:188486 Cpe20g00716 Cpe-Chr20:6089372 0 dispersed
Cpe01g01488 Cpe-Chr1:8885268 Cpe20g00042 Cpe-Chr20:188486 0 wgd
Cpe02g01080 Cpe-Chr2:9916388 Cpe20g00042 Cpe-Chr20:188486 0 wgd
Cpe20g00042 Cpe-Chr20:188486 Cpe09g00200 Cpe-Chr9:1159440 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00042 K11593 - csv:101212130 1763.43