Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00046 ATGACGGCAACGCTGTGTCTCCTCTGCATCCCTCTCCGATTCCCACCTAACCGTACTTCCTTCTCTTCTACTTCCATTTCCCTTACCCCTATTCGTGCTCAGAACCAGGAGATTCGGGTTTGCACCAATCGCACTTGCCGACGTCAAGGTTCCTTTCAGACACTCGAAACTCTCAGCGCCCTCGCACCTCCCACTATTACCGTCAATCCCTCTGGTTGCTTGGGGAAGTGCGGCGCTGGCCCTAACGTCGCTGTTTTGCCCGATGGATTCGTCGTCGGCCATTGCGCCACGCCTGCTCGTGCTGCCGAGGTCATCATGCAATTGTCTGGTGGAGTTTCTGATTCTCTTGGCGTCTCTAAGAGTTTGGAGGCTCTTGCTCTATGGAAGAGAGCCGAATGTGAGGTGGAGGACGGGAATTTCTCTCAGGCTGACCTACTTCTTTCGAAGGCGATAGAATTAAAACCATGTGGAGGTATCCATATAATATTCAAGGACAGGTCCATCGTAAGATTGGCTCTGGGGAATCATGCTGGTGCCCTTGAAGATGCAAATGAGGCTCTAAGAGTAGCTCCTCGATATCCCGAGGCTTACATTTGTCAAGGTGACGTATTCTTATCTATGGACCATTTTGATTCGGCTGAGATGTCATATTCAACAGCTTTAGAAATTGATCCTTCAATTCGCCGTTCAAAATCATTCAAGGCGCGAGTTGCTAAACTTCAGGAGAAGCTCAATGCTGTGAGAACACAATAA 753 49.4 MTATLCLLCIPLRFPPNRTSFSSTSISLTPIRAQNQEIRVCTNRTCRRQGSFQTLETLSALAPPTITVNPSGCLGKCGAGPNVAVLPDGFVVGHCATPARAAEVIMQLSGGVSDSLGVSKSLEALALWKRAECEVEDGNFSQADLLLSKAIELKPCGGIHIIFKDRSIVRLALGNHAGALEDANEALRVAPRYPEAYICQGDVFLSMDHFDSAEMSYSTALEIDPSIRRSKSFKARVAKLQEKLNAVRTQ 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 206824 212066 + Cp4.1LG20g00490.1 Cpe20g00046 486675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00046 250 Gene3D Glutaredoxin 35 120 - -
Cpe20g00046 250 Coils Coil 230 250 - -
Cpe20g00046 250 Gene3D Tetratricopeptide repeat domain 121 250 IPR011990 GO:0005515
Cpe20g00046 250 SMART tpr_5 160 193 IPR019734 GO:0005515
Cpe20g00046 250 SMART tpr_5 124 157 IPR019734 GO:0005515
Cpe20g00046 250 SMART tpr_5 194 227 IPR019734 GO:0005515
Cpe20g00046 250 ProSiteProfiles TPR repeat profile. 194 227 IPR019734 GO:0005515
Cpe20g00046 250 SUPERFAMILY TPR-like 124 244 IPR011990 GO:0005515
Cpe20g00046 250 SUPERFAMILY Thioredoxin-like 38 108 IPR036249 -
Cpe20g00046 250 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 15 249 - -
Cpe20g00046 250 CDD TRX_Fd_family 38 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00046 - - - bhj:120082956 394.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00046 Cpe-Chr20:206824 Cpe14g00873 Cpe-Chr14:7175070 1.17E-09 dispersed
Cpe02g01085 Cpe-Chr2:9948834 Cpe20g00046 Cpe-Chr20:206824 2.45E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g975 . . Bda06g00835 . . . . . . . . . . . . Cpe20g00046 . . . . . . . . . . . . . . . . . . . Lsi02g00036 . Chy12g01572 Cme12g02030 . Blo15g00048 . . . . . . . . . Cma13g01107 . Car13g00940 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012828 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00046 Cpe_Chr20 FPKM 3.056127 2.643737 3.906667 4.469869 6.028499 4.746461 5.642602 7.938331 7.92224 7.364602