Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00049 ATGGCTCAGACGGCAAGTCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGATGACGGCGATCTGGATTTTCTTCTACCTCCCAAGAAAATTATCGGTCCAGATGAGAATGGCTTGAAGAGAACTATTGAATATCAGTTTAACGAAGATGGTAATAAGGTTAAGATCACAACCACCTCGCGTACTCGCAAGCTCGCTCATGCTCGCCTCAGTAAACACGCCATTGAGCGTCGATCTTGGGCGAAGTTTGGTGACGCTGTTCACGAAGATGTTGGCAGCCGCCTCACTATGGTTTCCACCGAGGAGATCCTACTGGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCGAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTATGTAGGACTTGTGGCAAAAAGGGTGACCACTGGACCTCAAGGTGTCCTTACAAGGACTTGGCACTACAAGGCGAGGGATTGGATAAGGCTGCCGCACCAGAGGCGACAGCTGCTGCTCCCGGTGGTGCAACGAAGGGAACATATGTTCCTCCAGGTATGAGAGCAGGGGCAGACAGGACCGGAACCGATATGAGACGTAGGAACGATGAGAACTCTGTTCGTGTCACCAACCTCTCAGAGGACACAAGAGAGCCTGACCTGCTCGAGCTTTTCCGACCTTTTGGTGCCGTTAGCAGAGTTTATGTTGCAGTTGATCAAAAGACGGGTATGAGCAGAGGATTTGGTTTCGTGAACTTTGTGAACCGTGAGGATGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCGACTCCAAGGGCTACTTAA 870 50.23 MAQTASRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGLKRTIEYQFNEDGNKVKITTTSRTRKLAHARLSKHAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLALQGEGLDKAAAPEATAAAPGGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 222483 224464 + Cp4.1LG20g00470.1 Cpe20g00049 486678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00049 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cpe20g00049 289 SMART rrm1_1 209 282 IPR000504 GO:0003723
Cpe20g00049 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Cpe20g00049 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Cpe20g00049 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
Cpe20g00049 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Cpe20g00049 289 MobiDBLite consensus disorder prediction 171 207 - -
Cpe20g00049 289 SUPERFAMILY RNA-binding domain, RBD 206 287 IPR035979 GO:0003676
Cpe20g00049 289 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cpe20g00049 289 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Cpe20g00049 289 Gene3D - 181 289 IPR012677 -
Cpe20g00049 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Cpe20g00049 289 CDD eIF3G 37 156 IPR024675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00695 Cpe-Chr3:4208854 Cpe20g00049 Cpe-Chr20:222483 1.94E-179 dispersed
Cpe20g00049 Cpe-Chr20:222483 Cpe12g00570 Cpe-Chr12:5796751 8.33E-12 dispersed
Cpe20g00049 Cpe-Chr20:222483 Cpe02g01426 Cpe-Chr2:12380147 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00049 K03248 - csv:101212619 549.28