Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00053 ATGCAGTTGCCGGCTTCTTCATCTCTTCACACTTTCACTTTCTTCTTCTCTCTGCTGCCATGGATTTCGCTTAAGAATCCAGTTCTAAGTAGTAACCTTCTGCATCTCTCTCAGTCTCAGTTCTCTAATCCTAGGCCTAGATACTTAGAAATGGCTTCCTTTGAAAAAGACGATACACCGATGCTATCAGACACTGGTCCACCATTGTTAGATGAACAACTGGGTTCTTATTTTCCTTCGTATGCATCATTGGCCCGGAGTTCATCGCTATCAATTCCAACTTCTTCTGGGATATATGTCAGTGATGCAAAGCTTGTTGGTTATACTGGTCCCTTACGAATTGAAAGAAAAAGTCCATTCCTAGAGAGTGGTTCAAAATATACTCGCCGTAAACCTGAAAAATCTTCACAGTCAAGTCCAGGTGTGACTGAAAGCAAAACTGCAGAGCCATTGACAGACAAATTTCCTTCTTTCAAGACGAATGACGAGCCTGATTGGGCCATTCATCACTATGCTGGCAGAAATGAACACTTAATAAAGTCTGGCCAGCTGGGAGTGTGCAATGATCCTTTCTGTATAACATGCCCAACATATAATTCCAAAGCATCGCAACAGAAAAGCTCAAGAATGAGAGGCATATTTGACCCTGAGTTTCACAAGGATCTCTACGGAGAAGGGAAAGGTTGGGCAGTGAAGTTTCGGTCTGTCTGGTGCTTCTTGCTTCCGTATATTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTTCAGCAATGGAACAAGTTTTTTGTTATTTCTTGCTTACTGGCGATCTTCTTGGACCCGTTATTTTTCTTCGTGCTTGCTGTCCACTTTGTTAAGAAGTGTATATTTATTAATTGGCCGATGACCACAACATTGGTGGTTTTCCGAAGCATGACCGATTTTGTCTATTTCCTACACATGCTTCTCCAGTTTAGGTTGGCTTACGTGGCACCAGAAACCAGAGTTGTTGGAGCAGGCGAATTAGTTGACCATCCGAAGAAAATTGCTAAGAACTACCTTAAAGGAAATTTTTTTATAGATGTGCTTGTTGTTTTACCGCTGCCTCAGATAATAGTTTTTCTAATCCTGCCAAACTCTTTGGGGACATCTGGAGCAAATCATGCAAAAAATCTGTTACGCACTGCAGTTATGGCTCAATATATTCCCAGACTGTACAGGTTTCTACCTCTTCTTGCTGGTCAGTCTCCAAGTGGCTTTGTTTTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTCACCTTTATGTTGGCTGGTCATATTGTTGGGTCTCTCTGGTATCTCTTTGGGCTTCAGGGGGTGAATCGATGTTTTCGGGATGCCTGCAATCGCACTGGAAGTACGTTCTGCTTAGAATATATAGATTGTGGGCATGGGGACGAAGCTGGATATGACATTCAGGATTTACGGCGAGATCAGTGGAAAAGTAATGAGAATGCTACGGCATGTTTTGCTAAAGAAGGTTTTGATTATGGAATCTACCTTCAGGCTGTAAATCTTACTACAGAAAGCAATTTACTCACGAGATATACTTACTCATTGTTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGAAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTCACTATGGGTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGATTTTTCTTCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCATTAAGACGCCGTGATGTTGAGCAGTGGATGGAGCATCGTCGCTTGCCAGAGAGTTTAAGAAGGAAAGTACGACAGGCTGAAAGGTACAATTGGGCTTCTACAAGAGGCGTAAATGAAGAGAGGATTTTCGAAAATCTGCCTGAGGACCTACAAAGAAACATAAGACGACATCTCTTTAGATTTGTCAACAAGGTGCGCATTTTTGCACTGATGAACTATGAACCTATTTTAGATGCAATACGTGAGAGACTGCGACAAAGGACATACATAGAAGGAAGTGAAATTTTTACTGCTGGAGATATCATTGAGAAGATGGTTTTCATTGTACGGGGGAAAATGGAGAGCCGTGTAGATGGGAACGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGCGAGGAACTTCTAACATGGTGTCTTGAGCATTCCTCCATAAACAGAGATATGAAGCGACATCTAATTCCAGCACAAAAATTGGTCAGCAACCGGACAGTAAAATGCTCGACGAATGTTGAAGCATTTTCTCTCCGGGCTGCAGACCTTGAAGAAGTGACCAGTATGAATCACCCTACTGGAGGTACCTAG 2349 42.4 MQLPASSSLHTFTFFFSLLPWISLKNPVLSSNLLHLSQSQFSNPRPRYLEMASFEKDDTPMLSDTGPPLLDEQLGSYFPSYASLARSSSLSIPTSSGIYVSDAKLVGYTGPLRIERKSPFLESGSKYTRRKPEKSSQSSPGVTESKTAEPLTDKFPSFKTNDEPDWAIHHYAGRNEHLIKSGQLGVCNDPFCITCPTYNSKASQQKSSRMRGIFDPEFHKDLYGEGKGWAVKFRSVWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLLAIFLDPLFFFVLAVHFVKKCIFINWPMTTTLVVFRSMTDFVYFLHMLLQFRLAYVAPETRVVGAGELVDHPKKIAKNYLKGNFFIDVLVVLPLPQIIVFLILPNSLGTSGANHAKNLLRTAVMAQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHIVGSLWYLFGLQGVNRCFRDACNRTGSTFCLEYIDCGHGDEAGYDIQDLRRDQWKSNENATACFAKEGFDYGIYLQAVNLTTESNLLTRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMGIIGLGLLLFALLIGNMQIFLQALGRRRLEMSLRRRDVEQWMEHRRLPESLRRKVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMNYEPILDAIRERLRQRTYIEGSEIFTAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLTWCLEHSSINRDMKRHLIPAQKLVSNRTVKCSTNVEAFSLRAADLEEVTSMNHPTGGT 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 241688 256725 + Cp4.1LG20g00440.1 Cpe20g00053 486682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00053 782 Gene3D - 262 578 - -
Cpe20g00053 782 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 56 775 - -
Cpe20g00053 782 MobiDBLite consensus disorder prediction 123 159 - -
Cpe20g00053 782 SUPERFAMILY Voltage-gated potassium channels 253 583 - -
Cpe20g00053 782 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 56 775 - -
Cpe20g00053 782 Pfam Ion transport protein 258 576 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe20g00053 782 Gene3D Jelly Rolls 652 776 IPR014710 -
Cpe20g00053 782 ProSiteProfiles cAMP/cGMP binding motif profile. 667 724 IPR000595 -
Cpe20g00053 782 CDD CAP_ED 654 778 IPR000595 -
Cpe20g00053 782 Gene3D Helix hairpin bin 582 646 - -
Cpe20g00053 782 SUPERFAMILY cAMP-binding domain-like 582 774 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00053 Cpe-Chr20:241688 Cpe18g00596 Cpe-Chr18:6342951 2.60E-128 dispersed
Cpe20g00053 Cpe-Chr20:241688 Cpe05g00607 Cpe-Chr5:3693807 1.09E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00053 K05391 - csv:101215903 1206.82