Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00055 ATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCTGATCGGCTTCTCGAGATTGCGGAGAGAGTTTACGTGTTTGATTGTTGCTTCTCTACCGACGTCTTGGAAGAGGATGAGTACAAAGTATATTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCATCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAAACTAAAACTTGGGACATACTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCTCTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTTTCATTGGAGAGACAAAAAAATGTATTGTTGATGAACTGTGAACCTGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGCTCTCTTATTGTACCGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTACAGAACTTCTCCATGTCCTTTCTCCAGTAAACTCACAGCCTTCTCAAATGAGATACCTTCACTATCTTTCTAGGAGAAATCTAGGTTCTTATTGGCCTATACCTGATACACCTCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAAGGGTGTCGGCCTATCATACGCATTTACGGTCCGGACCCTTTAACACCAGGAAACAGAAATCCTAAACTTTTTTTTTCCAGTGCAAAGATGGAAAGAAATGGTCTCCAGTATCTACAGGCAGCAAGCAGAGTTGTAAAAATGGATGTTCGTTGTCATGTTCAAGGCGATGTTGTTCTTGAATGCATCCATTTAGATGGAGATCTAATACACGAGGAAGTGATGTTTAGAGTTATGTTTCACACAGCGTTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTCCTAAAAATTTTAGAGTAGAGGTACATTTTCTGAATGCTGAACATATTGTGCCAAACCTCACCTCAGCAGCAAAAAGTGATGACAAAATCGAAATCGAAATCGAAAGCAATTCGACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAACTTTGTTGACGTGCAGGAAGTAATGAGGGATTATGATGTTCAAATGGTACATGCGAATGAAACGGATGCTATAGACAATCAAGCAGTGTTAAAGGAAGATGCAGACCCGCCTACATTTCAACGCTGTAAATCATTTGGAGGGAGTCATGACTTTGACAAGAAGATGGATTGTAACGTTGAAGCAGTGAAGGACATCACTGTTGATGATGTGACTTTCAAAACAGATGAAAAAATGGACTCTGGTTTTCATGCCGTGAAGGACATTGTTGTGAATTATGGAGATAACAAGCCAAATCCTTTACTATTTTCTGGTAATGTACTGAAACGTACAGGGATCAAGGAACTGATAGACGATGCTTATGACATGTTGGACGGGGTGGAGCATAAAGGGTATGGAGAAGATACTGCTAATCCACACGTTGAGTTAAAGCTTCCTTCAAAAAAGATGGAAGCCGATGCATGGAGGCTTAAACTGAATCCCAAACAGCCTGAAAAAGGGGACTTTCTTGTAAAACAGGCAAAACCAAATACTCTTCCACCAGCTCTTCAGGCTAACACATCTTTCTTGCATGTATCATCTCCTAAAGTTTCTTTGTCACCCTCTTCATATTTTCACATAAATGCAAGATCTCCTCCTCCACCACCACCACCACCTCCTCCTCCACCTTCCAATCACTTGGCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCTCCTCCACCTCCACCTCCCATACCTAGAGCTCTACCACAATTATCTCCCATACGGCCACCGGCTTCACATGGAGCTCTGCTTTCTCCACGCCTAACAAATGCTAGAGCTCTGCCACCACCCCCTCCCCCACCTCCTCCAATTCAGAGGACAGCTTCTGCACATTTAACCCAAGGGCGACAGGTTTTAACATCTCCAGCAACATGTGTTGTATCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACTACTGGTCCTCTTCCACTGGTTCCTTCTTCCAGATCTCCAGGAGGTATGTCTCCACACCCAGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTAATGAGGGGACGTGGGTTCTCGCGGAGCACGGGGATGGCTGCTAAAGTGCCTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTAACTCGGGTACCAAAAGGGAGCTTATGGGAAGAATTGCAAAGATCTGGCGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGACTGTCCCTAAACCTATTGCTGATTCAGGAGGTAAATCCGGAGGACGAAGAAAGTCAGTTGGATCAAAATTGGACAAAATTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTCGGATGCCACTGTCTGACATGATGGCAGCAGTACTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGTCCCACCAAAGAAGAGATGGAGCTTCTCAAGGGATACTCTGGTGACATGGATAAACTTGGCAAGTGCGAACAGCTTGTATACAGAATACAAGCATCTGTTAGAGCTATCATGCTAAGGTCAAAATTAATACTTTCTAGAGATGATGCAAGTTCCTCGTGTGGAGTCGAAGCTAAGAGTATTTTCTTTCAAGATTCACTTCAGCTCACAGGTTTTGTGATGGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTTTCTGTCAAGAGGTAAGGAGTTCTTGCAAATTGAAGGAGATATTGAAAAGAATTCTTTGCCTGGGAAATATGCTAAACCAAGGAACTGCTAGGGGTTCTGCAATTGGGTTCAGGTTGGATAGTCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCGTTGCTTCGAAGTCACCATCACTTCTTGAATTTCATCTGGACCTTGGTAGCTTGGAAGCTACGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTAGTTGCTTCTGAAAGTGATGGCCCCATATCTCAAACTTTTCGTAAGATATTGAAAGGATTTGTTAGTCTTGCCGAGATGGAGGTCGAATCTGTGACCGTTCTTTACTCGGTGGTGGGTAGAAATGCTGATGCACTTGCTCTATATTTTGGCGAGGATCCTTCCCGTTGTCCATTTGAACAAGTTACAGGAACTCTGTTCCATTTTACAAAATCCTTTCTGAAAGCACATGAAGAGAATAGCAAGCAGTTAGAAATGGAGATGAGAAAGCTGAGAAAATCTAACAAGATCGATACAAAACTGAGTTTGGAGGTGGTAGAAACTTTAGCCTCCCAGAAGGTTTGCCAACACTAA 3603 42.41 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTDVLEEDEYKVYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTWDILSQYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWFSLERQKNVLLMNCEPGGWPILAFMLSALLLYRKQYEGEQKTLEMVYRQAPTELLHVLSPVNSQPSQMRYLHYLSRRNLGSYWPIPDTPLILDCLILRELPMLDGGKGCRPIIRIYGPDPLTPGNRNPKLFFSSAKMERNGLQYLQAASRVVKMDVRCHVQGDVVLECIHLDGDLIHEEVMFRVMFHTAFVHSNSLKLNRDEVDVLWDAKEQFPKNFRVEVHFLNAEHIVPNLTSAAKSDDKIEIEIESNSTEEFFEVEEIFSNFVDVQEVMRDYDVQMVHANETDAIDNQAVLKEDADPPTFQRCKSFGGSHDFDKKMDCNVEAVKDITVDDVTFKTDEKMDSGFHAVKDIVVNYGDNKPNPLLFSGNVLKRTGIKELIDDAYDMLDGVEHKGYGEDTANPHVELKLPSKKMEADAWRLKLNPKQPEKGDFLVKQAKPNTLPPALQANTSFLHVSSPKVSLSPSSYFHINARSPPPPPPPPPPPPSNHLAPKSSSLVCGNTPKHSAPPPPPPPPIPRALPQLSPIRPPASHGALLSPRLTNARALPPPPPPPPPIQRTASAHLTQGRQVLTSPATCVVSSSLPSPICEAPSPPQPTTGPLPLVPSSRSPGGMSPHPGAKGVSSSTDVKTSSIVMRGRGFSRSTGMAAKVPQRSSLKPLHWSKVTRVPKGSLWEELQRSGDSESAPEFDVSELETLFSVTVPKPIADSGGKSGGRRKSVGSKLDKIHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDMDKLGKCEQLVYRIQASVRAIMLRSKLILSRDDASSSCGVEAKSIFFQDSLQLTGFVMAEFKKSLNTVNSFCQEVRSSCKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVVASKSPSLLEFHLDLGSLEATSKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISQTFRKILKGFVSLAEMEVESVTVLYSVVGRNADALALYFGEDPSRCPFEQVTGTLFHFTKSFLKAHEENSKQLEMEMRKLRKSNKIDTKLSLEVVETLASQKVCQH 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 268773 280092 - Cp4.1LG20g00540.1 Cpe20g00055 486684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00055 1200 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Cpe20g00055 1200 Coils Coil 1063 1083 - -
Cpe20g00055 1200 Gene3D Protein tyrosine phosphatase superfamily 14 199 IPR029021 -
Cpe20g00055 1200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 188 IPR029021 -
Cpe20g00055 1200 MobiDBLite consensus disorder prediction 584 603 - -
Cpe20g00055 1200 PANTHER FORMIN-LIKE PROTEIN 15A-RELATED 1 1177 - -
Cpe20g00055 1200 SUPERFAMILY Formin homology 2 domain (FH2 domain) 660 1176 - -
Cpe20g00055 1200 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Cpe20g00055 1200 MobiDBLite consensus disorder prediction 732 751 - -
Cpe20g00055 1200 MobiDBLite consensus disorder prediction 700 716 - -
Cpe20g00055 1200 Gene3D Formin, FH2 domain 757 1167 IPR042201 -
Cpe20g00055 1200 Coils Coil 1157 1177 - -
Cpe20g00055 1200 Pfam Formin Homology 2 Domain 764 940 IPR015425 -
Cpe20g00055 1200 Pfam Formin Homology 2 Domain 961 1156 IPR015425 -
Cpe20g00055 1200 MobiDBLite consensus disorder prediction 579 648 - -
Cpe20g00055 1200 MobiDBLite consensus disorder prediction 694 765 - -
Cpe20g00055 1200 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cpe20g00055 1200 SMART PTEN_C2_2 198 338 IPR014020 -
Cpe20g00055 1200 MobiDBLite consensus disorder prediction 617 637 - -
Cpe20g00055 1200 Gene3D - 203 337 - -
Cpe20g00055 1200 ProSiteProfiles Formin homology-2 (FH2) domain profile. 759 1182 IPR015425 -
Cpe20g00055 1200 PANTHER FORMIN-J 1 1177 - -
Cpe20g00055 1200 SMART it6_source 757 1196 IPR015425 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe18g00780 Cpe20g00055 CCT
Cpe04g01480 Cpe20g00055 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01046 Cpe-Chr2:9648943 Cpe20g00055 Cpe-Chr20:268773 0 dispersed
Cpe18g00780 Cpe-Chr18:7393833 Cpe20g00055 Cpe-Chr20:268773 0 dispersed
Cpe20g00055 Cpe-Chr20:268773 Cpe04g01480 Cpe-Chr4:11754724 4.14E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00055 - - csv:101221127 1538.47