Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00068 ATGTATGCGAAGTCTAGCTCCTTCCAGATGCCTCCATTTTCATTCCATAAGAACACCATGCCTCCACCGTTTTTCTGCAATCTTGTTCCATTTCTCTGCATAAACATTCTTACACTACATTTCGATAATCGTATGCCCATCACTTCTTCTTTCATGTCAATTAATCGATTCCGTCTTTACTCAATATTATTTTTGTTGGCGGATATGAATCCTGATAAATTCACCCACAAGACTAACGAGGCACTTGCCGGAGCTCATGAATTGGCATTGAATTCCGGCCATGCTCAACTGACACCGCTCCATTTGGCGGTTGCTTTAATTTCTGATCCGAGTGGGATCTTGAGCCAAGCAATTGCTAGTTCCGGCGGCGACAATGCCCAAAAAGAAGTGGACACGGTTTTCAAGCGGGCGTTGAAGAAGCTCCCATCTCAGTCCCCTGCACCTGATGTAGTACCGGCGAGTACGACTCTGATTAAGGTAATCCGAAGGGCACAAGCAGCGCAAAAATCACGAGGAGACACGCATTTAGCTGTCGATCAATTAGTTCTTGGTCTTCTTGAGGATTCTCAGATTGGGGATTTGCTTAAAGAAGCTGGTGTCACCACTGCGAAAGTTAAGTCCGAGGTCGAGAAACTCCGTGGAAAAGAAGGGAAGAAAGTGGAGAGTGCATCTGGAGACTCAACATTTCAGGCACTCAAAACCTATGGGCGAGACCTGGTAGAACAAGCGGGGAAACTCGACCCAGTTATTGGCCGGGACGAGGAAATTCGTAGAGTGGTGAGGATTTTATCGAGAAGAACTAAGAACAATCCAGTTCTTATTGGGGAGCCTGGCGTTGGTAAAACTGCAGTGGTTGAAGGATTAGCGCAGAGAATCGTAAGAGGAGATGTACCAAGTAATCTGGCTGATGTGAGGCTCATAGCTTTGGATATGGGCGCTTTGGTTGCGGGGGCTAAGTACAGGGGAGAATTTGAAGAGAGGTTGAAGGCTGTATTGAAGGAAGTTGAAGATGCTGAAGGGAAGGTCATATTGTTTATTGATGAGATTCATCTTGTTCTTGGTGCTGGAAGAACTGAAGGGTCTATGGATGCTGCTAACCTCTTCAAGCCTATGCTGGCTAGAGGGCAGCTTCGTTGCATTGGGGCAACTACCCTTGAAGAGTACAGAAAGTACGTAGAGAAGGATGCGGCATTTGAGAGGCGGTTCCAACAGGTTTATGTGGCTGAACCGAGCGTGCCTGACACTATCAGCATCCTGCGAGGCCTGAAAGAGAGATATGAAGGCCACCATGGTGTTAGGATACAAGATCGAGCTCTTGTCGTCGCCGCCCAGCTTTCAAGTCGATATATCACTGGACGGCACCTTCCTGATAAGGCTATTGATTTAGTTGATGAAGCTTGTGCTAATGTGAGGGTCCAGCTTGATAGCCAGCCTGAAGAGATTGACAACTTGGAGAGGAAGCGAATGCAGCTTGAAGTTGAACTTCATGCTCTTGAGAAGGAGAAGGATAAAGCTAGTAAAGCTCGTCTTGTTGAAGTGAGGAGAGAGCTTGACGATTTGAGGGATAAGCTTCAGCCTTTGTTGATGAAATATCGCAAGGAGAAGGAAAGAATCGATGAGATTAGAAGACTGAAGCAGAAGAGGGAGGAGCTACAAATAGCTTTGCAAGAGGCTGAAAGAAGATACGATTTGGCAAGGGCTGCTGATTTGCGATATGGAGCCATCCAGGAAATAGAATCTGCATTAGCACGGATTGAAGGGAACACTGATGAGAATCTAATGTTAACCGAAACCGTCGGACCTGAACAAGTTGCGGAAGTTGTGAGCCGGTGGACTGGAATACCTGTCACGAGGCTTGGCCAGAATGACAAAGAGAGGCTGGTTGGGCTTGCTGAAAGATTGCACAAGAGAGTTGTGGGACAGAACCAAGCAGTGGATGCTGTGGCCGAGGCTGTGCTACGATCAAGAGCTGGATTGGGGAGGCCACAGCAGCCAACTGGGTCGTTCCTGTTTCTGGGTCCAACCGGTGTTGGCAAAACTGAGCTTGCCAAGGCGCTTGCCGAGCAACTCTTTGATGATGAAAACCTCCTGGTGAGAATCGACATGTCTGAATATATGGAACAGCACTCAGTTTCACGCCTCATTGGTGCTCCTCCTGGGTATGTTGGGCATGAGGAAGGAGGGCAACTCACAGAGGCTGTAAGGCGGAGGCCTTACAGTGTTGTTCTATTTGATGAAGTGGAGAAAGCTCACGTCTCTGTGTTCAACACTCTTCTCCAAGTTTTAGACGATGGAAGGCTGACGGATGGCCAAGGTCGCACTGTGGATTTCAGAAACACAGTCATTATCATGACCTCTAACATTGGAGCTGAATATCTCCTTTCTGGGCTGATGGGGAAGTGCACAATGCAAGTTGCTCGTGATCGAGTTATGGAAGGGGTGCGGAAACACTTCAGGCCAGAGCTGCTTAATCGCTTGGATGAAATCGTTGTATTTGATCCTCTCTCGCACGACCAGCTGAGGAAAGTTGCCAGATTGCAAATGAAAGATGTTGCAGCTCGCCTGGCTGAGAGGGGCGTTGCCTTGGGTGTTACCGATGCCGCTCTTGATTATGTCTTGGCAGAGAGCTACGATCCAGTGTATGGCGCGAGACCGATAAGAAGATGGCTGGAGAAGAGGGTGGTGACGGAGCTGTCGAGAATGTTGATCAAAGAAGAAATCGACGAGAATTCAACCGTGTTCATTGATGCAGCAGCAGATGGGGATGGCTTGTCGTACAGAGTGGAGAAGAATGGTGGATTTGTTGATGCAGCAACTGGCAAGAAGTCTGATGTTTTGATTCAAATCAACAACGCCGTCCCAAGAAGCGAGGCTGCTCAGACTGTGAAGAAGATGAAGATTCAAGAAATTGATGAAGAAGATGAGATGGAAGAGTCACGAACTTGCCTAATTTCGCTGCTTCCAGAAATGGGGACGATTCTCCAAGCTGTTTACAGTGTCTCAGACCCTTTGTCGCCGATTGGGACACCGGACGACCGGGGATTCACTGCCGTCACTTCCGCCTCCGATTGCCATGGAATGTGGTATAGTGCTCTCTTGGTTGCGCCGTCGGTTTTGTTCGTGATCTATTTGGCGACTAGCGCCATCAAAAACATGAAGAGGTTTTTCGTCGGTCGGTCGTTTATAATGATTTCGTATTATGCCCTTCTCTGGATCGCTACGCTCCTAAATCTTGCTTGGTGCTCTCTTCAGGCATGGGAATGCTCTCCTGGGAAGGAGGTTCTTTGGAATATTTTGTCTTTGTTCACATCATCTGGAATGTTGTTTCTGGAAATTAGTCTGGTAGCCTTCTTACTCAAAGGAAATTATTCAGGTGGGATGGAAGCAATGTTCCACAATCTTATTATCTCGGGAACTCTAGTTGGTGTCGATGTGCTTCTTAAGGTCGTATACGTGTTCGGGTTTGGCATCCCACTGTTCATCAGGGTTGGTAGTTCACACTGGGCAAAGTGGGGTGTATGGACTATCCACAAGTTGTTGCCAACTGCAGCATATGGCTTCATATTGTTTGTTCATTTCTCAAAATGGAGAGATAAGCTACCACCCAGACCGTCATTCTATAATTACATCGCTGTGATGTTTTTTGTTAGCGCTTTAGCATTTTTCGCCAGTGCGCTTGCTGCATTTGGAGTTGAGTTTGGCATCTGGTTGTACAATTTCACACTTATCAGCTACCATTCTATGTATCTTCCGTTCCTGTATGCGACGTTTCTGGCAGATTTTTTCCAGGAGGAAGACTTCCTTTTGGAGAATGCGTACTATTCAGAGATGAGAGATGCAGGATTCTTTGATTCAGACAACTTTGTAGTCAAGAATGGAGCTGAGAATTTTACCTTGGGAAAGCGTGGTGCATATGCTCTGGATCGAGCCCAAATGCCAGATAAATAA 3948 47.09 MYAKSSSFQMPPFSFHKNTMPPPFFCNLVPFLCINILTLHFDNRMPITSSFMSINRFRLYSILFLLADMNPDKFTHKTNEALAGAHELALNSGHAQLTPLHLAVALISDPSGILSQAIASSGGDNAQKEVDTVFKRALKKLPSQSPAPDVVPASTTLIKVIRRAQAAQKSRGDTHLAVDQLVLGLLEDSQIGDLLKEAGVTTAKVKSEVEKLRGKEGKKVESASGDSTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEDAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLLMKYRKEKERIDEIRRLKQKREELQIALQEAERRYDLARAADLRYGAIQEIESALARIEGNTDENLMLTETVGPEQVAEVVSRWTGIPVTRLGQNDKERLVGLAERLHKRVVGQNQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHVSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNIGAEYLLSGLMGKCTMQVARDRVMEGVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAARLAERGVALGVTDAALDYVLAESYDPVYGARPIRRWLEKRVVTELSRMLIKEEIDENSTVFIDAAADGDGLSYRVEKNGGFVDAATGKKSDVLIQINNAVPRSEAAQTVKKMKIQEIDEEDEMEESRTCLISLLPEMGTILQAVYSVSDPLSPIGTPDDRGFTAVTSASDCHGMWYSALLVAPSVLFVIYLATSAIKNMKRFFVGRSFIMISYYALLWIATLLNLAWCSLQAWECSPGKEVLWNILSLFTSSGMLFLEISLVAFLLKGNYSGGMEAMFHNLIISGTLVGVDVLLKVVYVFGFGIPLFIRVGSSHWAKWGVWTIHKLLPTAAYGFILFVHFSKWRDKLPPRPSFYNYIAVMFFVSALAFFASALAAFGVEFGIWLYNFTLISYHSMYLPFLYATFLADFFQEEDFLLENAYYSEMRDAGFFDSDNFVVKNGAENFTLGKRGAYALDRAQMPDK 1315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 343652 354919 + Cp4.1LG20g00610.1 Cpe20g00068 486697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00068 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 915 IPR027417 -
Cpe20g00068 1315 Coils Coil 531 568 - -
Cpe20g00068 1315 Pfam ATPase family associated with various cellular activities (AAA) 272 385 IPR003959 GO:0005524|GO:0016887
Cpe20g00068 1315 ProSitePatterns Chaperonins clpA/B signature 2. 699 717 IPR028299 -
Cpe20g00068 1315 CDD AAA 250 405 - -
Cpe20g00068 1315 Gene3D - 218 411 IPR027417 -
Cpe20g00068 1315 Pfam Predicted membrane protein 1023 1275 IPR018781 -
Cpe20g00068 1315 Gene3D - 618 834 IPR027417 -
Cpe20g00068 1315 Pfam Clp amino terminal domain, pathogenicity island component 85 127 IPR004176 -
Cpe20g00068 1315 Pfam Clp amino terminal domain, pathogenicity island component 164 214 IPR004176 -
Cpe20g00068 1315 Gene3D - 71 216 IPR036628 -
Cpe20g00068 1315 CDD AAA 639 834 - -
Cpe20g00068 1315 Coils Coil 321 341 - -
Cpe20g00068 1315 Pfam AAA lid domain 412 511 IPR041546 -
Cpe20g00068 1315 Gene3D - 835 933 - -
Cpe20g00068 1315 Coils Coil 474 523 - -
Cpe20g00068 1315 ProSitePatterns Chaperonins clpA/B signature 1. 363 375 IPR018368 GO:0005524
Cpe20g00068 1315 SMART ClpB_D2_small_2 835 926 IPR019489 -
Cpe20g00068 1315 Pfam AAA domain (Cdc48 subfamily) 665 829 IPR003959 GO:0005524|GO:0016887
Cpe20g00068 1315 PANTHER ATP-DEPENDENT CLP PROTEASE 72 929 - -
Cpe20g00068 1315 SMART AAA_5 665 809 IPR003593 -
Cpe20g00068 1315 SMART AAA_5 267 412 IPR003593 -
Cpe20g00068 1315 Gene3D - 412 612 IPR027417 -
Cpe20g00068 1315 SUPERFAMILY Double Clp-N motif 72 226 IPR036628 -
Cpe20g00068 1315 ProSiteProfiles Clp repeat (R) domain profile. 71 215 IPR004176 -
Cpe20g00068 1315 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 72 929 - -
Cpe20g00068 1315 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 743 761 IPR001270 GO:0005524
Cpe20g00068 1315 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 776 790 IPR001270 GO:0005524
Cpe20g00068 1315 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 714 732 IPR001270 GO:0005524
Cpe20g00068 1315 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 669 687 IPR001270 GO:0005524
Cpe20g00068 1315 Pfam C-terminal, D2-small domain, of ClpB protein 835 914 IPR019489 -
Cpe20g00068 1315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 613 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00068 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 1664.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00068 Cpe-Chr20:343652 Cpe20g00808 Cpe-Chr20:7324212 0 dispersed
Cpe02g01360 Cpe-Chr2:11982018 Cpe20g00068 Cpe-Chr20:343652 0 transposed
Cpe06g00301 Cpe-Chr6:1663687 Cpe20g00068 Cpe-Chr20:343652 0 transposed
Cpe11g00923 Cpe-Chr11:7695240 Cpe20g00068 Cpe-Chr20:343652 8.76E-38 transposed
Cpe02g01031 Cpe-Chr2:9546607 Cpe20g00068 Cpe-Chr20:343652 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00068 Cpe_Chr20 FPKM 0.0 0.272197 0.448529 0.0 1.906721 2.113116 1.676525 0.0 0.0 0.0