Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00072 ATGGATTTGTGGATTGTTGCAGCAGCTACTGGTGCTGGATACGTAGCTAAGTACTGGAAGAATCAATCAAAGGATGGGGATTGTTCTTTATCACAGTTATCCTTTGGGGATTCCAATTTGGTGAGTCCTCAATACTCAAATCATTTGCTTAGCAAATTTTCACAAAGGAAGAAACGATATGAGGATGTCTTTGGACATGGAGGAATGGAAGGAACATCTTCAGATCAGAACCCATCAGACATTGCTTCAGTTGCAGAGCTGGCCTGCATAAGTGGAGGATTTGAAATTGGAAAGCTCGGACTTTTTGGGAGTCACCAAGATTTCAATGTGTTCTCTACACCAAATATGACTTTGAACTCTGAAGAACGGGTCGGGGAAAGCAGCAAAAGCAACACGATGGCTAATGACATTGGAATCTCAGTTTGCAATTCTTCTGGAAGAACAGCCTCTTCAAGAAACAGAAGCACAGCTAAAGGTAGATACTTACATGGGGATCTTATCAAACCTCTGACTTATGAAGAAGATTGCCTTCCAGCCCATCAGAGTTCTTTGGATCCATGCATTGCTGTGGAACTGGAGGAACATAAGCTACCCAAGGGATCACATTTTGATGCTGATGAAAGTGTATGTGCGGTTTCTCAACTGCCATTTGGGCCTCTGTCTGATACAGTAAGTAATAAGAAGACAGGAAAGGAATGGGAAAGAAAGTCAAGAAGTTCCAACAAAATGGCTAACAGGGAACACTCCGATTCTAAAGCAGCTACTGGTGCTGGATACGTAGCTAAGTACTGGAAGAATCAATCAAAGGATGGGGATTGTTCTTTATCACAGTTATCCTTTGGGGATTCCAATTTGGTGAGTCCTCAATACTCAAATCATTTGCTTAGCAAATTTTCACAAAGGAAGAAACGATATGAGGATGTCTTTGGACATGGAGGAATGGAAGGAACATCTTCAGATCAGAACCCATCAGACATTGCTTCAGTTGCAGAGCTGGCCTGCATAAGTGGAGGATTTGAAATTGGAAAGCTCGGACTTTTTGGGAGTCACCAAGATTTCAATGTGTTCTCTACACCAAATATGACTTTGAACTCTGAAGAACGGGTCGGGGAAAGCAGCAAAAGCAACACGATGGCTAATGACATTGGAATCTCAGTTTGCAATTCTTCTGGAAGAACAGCCTCTTCAAGAAACAGAAGCACAGCTAAAGGTAGATACTTACATGGGGATCTTATCAAACCTCTGACTTATGAAGAAGATTGCCTTCCAGCCCATCAGAGTTCTTTGGATCCATGCATTGCTGTGGAACTGGAGGAACATAAGCTACCCAAGGGATCACATTTTGATGCTGATGAAAGTGTATGTGCGGTTTCTCAACTGCCATTTGGGCCTCTGTCTGATACAGTAAGTAATAAGAAGACAGGAAAGGAATGGGAAAGAAAGTCAAGAAGTTCCAACAAAATGGCTAACAGGGAACACTCCGATTCTAAAGGTGGCCTGGATGAATCGTTGGTATTATATCTTGGATTTTTCATTGGCATAATCTATTCTTTCATATCCAATAAGAGGGAAGTTCATAAGTTGAAAGAATTGTTAAAGCAGACTGAGTGTTTGGTTGAAGATCTTCAAGAGGAACTTGAAATGAAGGACTCATTAACGCTGAAGGAGCTCAGTAATGACACTTACAGTAATGGCTTCTCTGAGAAAACAGTGGATGAATCTTCTCCAAAACATGTCATGGATTACACAGTAAACTTCAATGCTGAAGAACTATACAAGCATATGGCAGAGGAAAGTTCTGAATCAATCCACAGAATCGAAGCCGAACTGGAAGCGGAACTCGAGAGGTTAGGATTAAATATAAGCACTGAAGGCACAGAGAGATATCCCGACGACGACGACGATGAGCTTGGCCCAGAATTTGAAGAAGATTTTGCTGAAGGTGAGTTGAGGAATGACATGATGAGTGGAGGAAGTTGTGGGTGGAGCAAGGCTAATAAAGAAGCAAGCGACTCAACCGTTCACTCTGGAAACTATACAGTGTCACCAAGGGAACTCAGCTTGCGTTTGCATGATGTTATTCAGTCGAGACTTGAAGCACGTATCGAGGAGCTTGAAAATGCCCTTCAGAATAACCACAAGAAGCAGCAGCTTCTTAATACAGAATACACGAGTTCTTGGCTTGAATAA 2190 42.05 MDLWIVAAATGAGYVAKYWKNQSKDGDCSLSQLSFGDSNLVSPQYSNHLLSKFSQRKKRYEDVFGHGGMEGTSSDQNPSDIASVAELACISGGFEIGKLGLFGSHQDFNVFSTPNMTLNSEERVGESSKSNTMANDIGISVCNSSGRTASSRNRSTAKGRYLHGDLIKPLTYEEDCLPAHQSSLDPCIAVELEEHKLPKGSHFDADESVCAVSQLPFGPLSDTVSNKKTGKEWERKSRSSNKMANREHSDSKAATGAGYVAKYWKNQSKDGDCSLSQLSFGDSNLVSPQYSNHLLSKFSQRKKRYEDVFGHGGMEGTSSDQNPSDIASVAELACISGGFEIGKLGLFGSHQDFNVFSTPNMTLNSEERVGESSKSNTMANDIGISVCNSSGRTASSRNRSTAKGRYLHGDLIKPLTYEEDCLPAHQSSLDPCIAVELEEHKLPKGSHFDADESVCAVSQLPFGPLSDTVSNKKTGKEWERKSRSSNKMANREHSDSKGGLDESLVLYLGFFIGIIYSFISNKREVHKLKELLKQTECLVEDLQEELEMKDSLTLKELSNDTYSNGFSEKTVDESSPKHVMDYTVNFNAEELYKHMAEESSESIHRIEAELEAELERLGLNISTEGTERYPDDDDDELGPEFEEDFAEGELRNDMMSGGSCGWSKANKEASDSTVHSGNYTVSPRELSLRLHDVIQSRLEARIEELENALQNNHKKQQLLNTEYTSSWLE 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 389669 393100 + Cp4.1LG20g00740.1 Cpe20g00072 486701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00072 729 PANTHER EMB|CAB62613.1 1 180 - -
Cpe20g00072 729 Coils Coil 596 616 - -
Cpe20g00072 729 MobiDBLite consensus disorder prediction 663 679 - -
Cpe20g00072 729 MobiDBLite consensus disorder prediction 227 249 - -
Cpe20g00072 729 Coils Coil 695 722 - -
Cpe20g00072 729 Coils Coil 525 552 - -
Cpe20g00072 729 PANTHER EMB|CAB62613.1 253 728 - -
Cpe20g00072 729 MobiDBLite consensus disorder prediction 472 498 - -
Cpe20g00072 729 PANTHER EMB|CAB62613.1 253 728 IPR040348 GO:0008356
Cpe20g00072 729 MobiDBLite consensus disorder prediction 647 679 - -
Cpe20g00072 729 MobiDBLite consensus disorder prediction 466 498 - -
Cpe20g00072 729 MobiDBLite consensus disorder prediction 223 253 - -
Cpe20g00072 729 PANTHER EMB|CAB62613.1 1 180 IPR040348 GO:0008356
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00072 - - - mcha:111009000 621.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe18g00705 Cpe20g00072 CCT
Cpe18g00705 Cpe20g00072 ECH
Cpe04g01461 Cpe20g00072 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00072 Cpe-Chr20:389669 Cpe02g00326 Cpe-Chr2:1722836 2.15E-08 dispersed
Cpe18g00705 Cpe-Chr18:6974938 Cpe20g00072 Cpe-Chr20:389669 1.46E-41 wgd
Cpe20g00072 Cpe-Chr20:389669 Cpe04g01461 Cpe-Chr4:11642038 1.34E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g656 . . . . . Bpe13g00311 Bma06g00153 . Cmo13g01122 . . . . Car11g00185 Sed08g0274 Cpe20g00072 Cpe04g01461 Bhi02g00096 Tan09g2045 Cmetu02g1859 . Hepe09g0272 . . Cla06g01540 Cam06g1699 Cec06g1761 Cco06g1760 Clacu06g1666 Cmu06g1612 Cre06g2425 . . Cone13ag0036 Cone19ag0045 . Csa01g00597 Chy12g01501 Cme12g01945 . . Bda11g01722 Bda14g00878 . Bpe15g00582 . . Sed01g2298 . Cmo11g00210 Cma13g01076 . Car13g00912 . . Cpe18g00705 Bhi08g01086 Tan05g2364 Cmetu12g0950 Lac10g0146 Hepe07g2466 . . Cla04g01156 Cam04g1214 Cec01g1725 Cco01g1770 Clacu04g1241 Cmu04g1220 Cre01g1516 Lsi06g01413 Csa01g00293 . Cme02g01830
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014191 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00072 Cpe_Chr20 FPKM 7.616238 8.092378 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0