Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00082 ATGGATGTTTCAGAATGTGACACAAGCGATGGCTTGGAGCATAAAATCAAAAAGAGAAAGCAAGAACAGTTTGATGATGCTCCTATAGGAAACAATATGAGCAGTGTTCATTCAGGTTCTGAAGATGCATCTTCAATGGATAAAATCCTCTCTGGAAATGATTCTGCTTCTGCCATGTTCATTATATGCTCTAAGTTGGAATCTGAAACAGAAAAGATGTGTAATGTTCATGAAAAGAAGCAGGACGGTGACCGAAAAATGTCCGAGGATATGGCGACAGAGCATGGAAATCTTATATATAGTGTTGAAATGGAAGAGCCAAGTTCCATGGATACTTACAAAGTAGAGTCTGGAATCTCTGAAGATACAGGTGGTATGAGAAATCATGATGATCATGAAAACGTTGCCAATGTTACTGAAGAACTGAGCGAGGAGACGGTAGATGCGAGGAAGGATTGTCATTCTAGAGAACAATTCTCCGACTCTGGTAATCATTCTCCATGTAATGAGCAGGAATTTGAGAGGGATCGTTCATTGAAAAGTTCCGATGTAGAACAGATAAATGGGGGAGGCGCTGTGGAGGAAGCTTCTGTTTTCGGTTCGGTTGGTGAGCATGATGATGAGACTTCAACAAGCAAGGAACTGATTACATCAACTCCTTGCTGCATACCTCCTGAACTGGATAATGCTGAAACTGTGAAGGAAGAAGTTGTATGTTTCTCGGGTTCTGGTGAGACGAGCAGTGGTGTTGACGCTATCATCGAAGAGAAAACTCCGACGCCAGTATTGGATACTTCAGAGAAAGGAGATTCTATTGGTTGTTCGAGGAAAAAGCTTCTTGTTCTCGATGTAAACGGACTGCTTGCAGATTTTATTTGTTATGTTCCATATGGATATAAGCCAGACCTTGTAATTGGACAAAAAGCAGTGTTCAAGAGGCCATTTTGTGACGATTTTATTAAGTTCTGTTTCGAAAGATTCGAGGTGGGCGTTTGGTCATCGAGAACTCGGAGAAATGTGGACATGGCCATAGATTTTCTAATGGGAGACTTCAGACAAAAATTACTATTTTGCTGGGATCAGTCACATTGTACCGACACCACGTTCTCAACCGTTGAGAACAAGCACAAGCCTTTAGTCTTAAAGCAAATCAAGAAGCTGTGGAAATACCTTAAGCCACGAGAGTTCAATGCATCAAACACTCTACTGTTGGATGATTCCCCACACAAGGCATTGTGCAACCCGGCAAACACTGCAATTTTTCCTGTAACATATCGGTTTAGAGATACTGACGATACGTCGTTAGGACCGGGGGGCGATCTTCGGGTTTACCTGGAAGGTCTATCAATGGCAGAAAATGTTCAAAAATACGTCGAGCAGAATCCTTTCGGTCAACGCCCCATTACAGAAAAGAACCCGTCTTGGAAGTTTTATAGGCGGATCATATATTTCGTTGAGCGCAGAAATGATCAGGAGGATGCCAGTTCCTTCATATGGAACTGA 1503 42.18 MDVSECDTSDGLEHKIKKRKQEQFDDAPIGNNMSSVHSGSEDASSMDKILSGNDSASAMFIICSKLESETEKMCNVHEKKQDGDRKMSEDMATEHGNLIYSVEMEEPSSMDTYKVESGISEDTGGMRNHDDHENVANVTEELSEETVDARKDCHSREQFSDSGNHSPCNEQEFERDRSLKSSDVEQINGGGAVEEASVFGSVGEHDDETSTSKELITSTPCCIPPELDNAETVKEEVVCFSGSGETSSGVDAIIEEKTPTPVLDTSEKGDSIGCSRKKLLVLDVNGLLADFICYVPYGYKPDLVIGQKAVFKRPFCDDFIKFCFERFEVGVWSSRTRRNVDMAIDFLMGDFRQKLLFCWDQSHCTDTTFSTVENKHKPLVLKQIKKLWKYLKPREFNASNTLLLDDSPHKALCNPANTAIFPVTYRFRDTDDTSLGPGGDLRVYLEGLSMAENVQKYVEQNPFGQRPITEKNPSWKFYRRIIYFVERRNDQEDASSFIWN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 428898 433430 - Cp4.1LG20g00900.1 Cpe20g00082 486711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00082 500 MobiDBLite consensus disorder prediction 27 50 - -
Cpe20g00082 500 MobiDBLite consensus disorder prediction 7 25 - -
Cpe20g00082 500 Gene3D - 241 464 IPR023214 -
Cpe20g00082 500 Pfam NLI interacting factor-like phosphatase 278 455 IPR004274 -
Cpe20g00082 500 SUPERFAMILY HAD-like 275 454 IPR036412 -
Cpe20g00082 500 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 30 485 - -
Cpe20g00082 500 MobiDBLite consensus disorder prediction 168 182 - -
Cpe20g00082 500 MobiDBLite consensus disorder prediction 154 184 - -
Cpe20g00082 500 ProSiteProfiles FCP1 homology domain profile. 273 448 IPR004274 -
Cpe20g00082 500 MobiDBLite consensus disorder prediction 1 50 - -
Cpe20g00082 500 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 30 485 - -
Cpe20g00082 500 SMART forpap2 276 433 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00082 - - - cmo:103492827 608.216
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe18g00711 Cpe20g00082 CCT
Cpe18g00711 Cpe20g00082 ECH
Cpe04g01454 Cpe20g00082 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00711 Cpe-Chr18:7007426 Cpe20g00082 Cpe-Chr20:428898 5.65E-95 wgd
Cpe02g01403 Cpe-Chr2:12248967 Cpe20g00082 Cpe-Chr20:428898 5.73E-75 wgd
Cpe20g00082 Cpe-Chr20:428898 Cpe04g01454 Cpe-Chr4:11596061 8.95E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g458 . . . . . . . . . . Cma10g00292 Cma11g00214 . Car11g00193 Sed08g0286 Cpe20g00082 Cpe04g01454 Bhi02g00089 Tan09g2033 Cmetu02g0987 . . . . . . . . . . . . . . . Lsi02g00127 Csa01g00609 Chy12g01491 Cme12g01931 . . . . . Bpe15g00572 . . . . Cmo11g00216 . . Car13g00903 . . Cpe18g00711 Bhi08g01074 . . Lac10g0174 Hepe07g2454 . . . . . . . . . Lsi06g01406 Csa01g00303 Chy02g02435 Cme02g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013596 0 3 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00082 Cpe_Chr20 FPKM 0.203252 1.026203 1.717041 3.557347 1.055107 0.231715 0.0 0.0 0.083907 0.437999