Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00083 ATGAGAGACATGGGAAGGCAGAGTATTCCATTGATTGATCGTGGGGCAGCGGGGAGGAGCCATGGCACATCACAAGAACATCAGTTAACAGTCCTGGAACATGGGAATGCTGAACCGCCTGCAAATGTTGGGTTTGGCAGAGTACTTTCACTTGCAAAACCTGAAGTAGGGAGGTTGATAATTGCTACCATTGCTCTTCTGATTGCTTCCACCTCAACTATATTGATTCCGAAATTCGGTGGAAAGATTATAGACATTGTAACTGGAGATATCGACACACCCGAACAGAAAAGCAAAGCTTTAAAGGAAGTCACAAACACCATTGAAATAGCCTTCTTTGACGTTACCCGAACAGGGGAGCTTCTTAGTAGGCTATCTGAGGATACCCAAATCATTAAGAATGCAGCAACTACCAATCTTTCAGAAGCTCTAAGAAGCCTATCAACTGCATTAATTGGGTTGACCTTCATGTTTTCAACTTCTTGGAAGTTAACATTATTGGCTTTGGTTGTTGTCCCTGTTGTTTCTGTTGCTGTTCGTGAATTTGGTCGCTATCTTCGTGAGCTGTCTCACAAGACTCAAGCAGCAGCAGCTGTCTGTGCTTCAATAGCTGAGGAATGTTTTGGTGCCGTGCGCACTGTCAGATCTTTCGCTCAAGAATCCTATGAGATATCACGGTACTCTCAGAAAGTAGAGGAGACATTGCAACTGGGACTTAAACAAGCTAAAGTGATTGGATTATTCTCTGGAGGTCTCTTTGCAACGACGACCTTATCTGTTATTATCGTCGTGATATATGGAGCTAATTTGGCAATCAAAGGGTTCATGAGTCCAGGAGCTCTGGCTTCTTTCATCCTCTATAGTTTAACTGTTGGAACCTCCGTATATGGGTTGTCAGGATTGTACACTGTTGTCATGAAAGCTGCTGGAGCTAGTAGACGAGTTTTTCAGCTCCTTGATCGTGTATCAACAATGGTTAATTCAGGAAATAAGCTCCCTATTGGTGATCAAGATGCAGAGGTCGAGTTGGACGATGTCTGGTTTGCATATCCGTCCCGCCCGAATCACACGGTGCTGAAGGGAATAACACTGAGATTGCAGCCTGGCACAAAAGTTGCTCTAGTTGGTCCGAGTGGTGGTGGAAAAACCACCATAGCAAACCTGATTGAAAGGTTTTATGATCCTATTAAAGGACGGATTCTGATAAATGGCGTTCCTTTGATCAGTATAGTGAGCCAGGAGCCTGTTCTTTTCAACAGCTCCATAGAGGAGAACATAGCCTATGGTTTAGATGGCAAAGTTGATAGCATAGATGTAGAAAATGCAGCTAAAATGGCCAATGCACATGACTTCATATCAAACTTCCCTGAAAAGTACAAAACTCACGTCGGAGAACGCGGGGTAAGGCTGTCGGGCGGACAAAAGCAAAGAGTAGCTATAGCAAGAGCTCTACTTATGAACCCAAGAATTCTCCTGTTGGATGAAGCCACAAGTGCTCTAGATGCTGAAAGTGAACACCTAGTACAGGACGCAATGGATTCTTTGATGAGAGGCAGGACGGTGCTAGTCATTGCTCACAGGCTATCAACTGTGAAGACCGCAGACACTGTGGCTGTTGTTTGTGATGGTGAAATTGTTGAAAGTGGAAGGCATGAAGAGCTTCTTAGCAGAGATGGTGTCTACACTGCACTAAGATCGCGGGTAGCCCAGCACTCCAAGTATAAACCTGTTTTCCAAACTCCCAGCCAGAGCTCTCTGAAGACCATAATCAAGGACAACATGAACAAATTCTTTTCTCGCAAACTTGCATCAAGGCTTTCGAATTCCTATGGGAATTCTCACTATTGCAGGGATTGCGCTTCTTTTTCCACACAAGTGCTAACCGGTAACCAAAACTACTTCTATGGCTCCTTCATCACTCGCCCGGTTAAGGATCACTCGCGTTCATGGAGTTCACATCGAAGTTTTACCGAGAAAATTCATGGGTTTTTCTCAGGCCCGGTGGTCGGAAAGCGATTCATATTGAATCCTTCAAACACCCTTTTCAAGGGGTCCATTAAGAGTCTAGTAGGAAGGTCTCTCTTTATGGGAAGCCCATTTTCGAAACTTAAATTTCAGTTGAAACCAGGTTTTGATCATCGATGGTCAGGCAGGAGGGCATGGTTTCAAAGGCTGACGACTAATGATGTAGTGTTGGGGTTGATTATAGCTAATGTTGCTGTTTTCCTCCTCTGGCGGATTGCTGATCCTATCTTTATGTCAAAAAACTTTACTATCTCTGTAGAAAATGTTAGAAGCGGACGCATACATACATTGATTACATCAGCCTTCAGTCACGTAGAAATTGGCCATATAGTATCCAACATGATTGGACTATACTTCTTTGGGATGAACATCGGTCGAGTGTTTGGTCCCGAGTTTTTGTTGGGATTGTATCTGGCTGGAGCAATTGGCGGGTCAGCATTTTACTTGGCACAGCATCTGTTTCAAGCATCATCCTCAAAGAGCCGGCCATTTTGGGGCAAGGATCCCGCACGAGCACAAGGATTGGGTGCAAGCGGAGCTGTAAATGCTATCATGCTGCTTGATATATTCCTCTTCCCAAAGTCGACCCTCTATCTCGAATTCTTTATACCTGTTCCTGCCATCTTACTGGGCATTTTTCTCATTGGAAAAGACATGTTGAGGATACTAGAGAATGACAGCCAAATTTCAGGATCTGCACACCTCGGGGGTGCTGCAGTTGCAGCCTTAGCCTGGGCCCGAGTTCGCCGGGGTCGTTTCTGA 2787 44.74 MRDMGRQSIPLIDRGAAGRSHGTSQEHQLTVLEHGNAEPPANVGFGRVLSLAKPEVGRLIIATIALLIASTSTILIPKFGGKIIDIVTGDIDTPEQKSKALKEVTNTIEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRSLSTALIGLTFMFSTSWKLTLLALVVVPVVSVAVREFGRYLRELSHKTQAAAAVCASIAEECFGAVRTVRSFAQESYEISRYSQKVEETLQLGLKQAKVIGLFSGGLFATTTLSVIIVVIYGANLAIKGFMSPGALASFILYSLTVGTSVYGLSGLYTVVMKAAGASRRVFQLLDRVSTMVNSGNKLPIGDQDAEVELDDVWFAYPSRPNHTVLKGITLRLQPGTKVALVGPSGGGKTTIANLIERFYDPIKGRILINGVPLISIVSQEPVLFNSSIEENIAYGLDGKVDSIDVENAAKMANAHDFISNFPEKYKTHVGERGVRLSGGQKQRVAIARALLMNPRILLLDEATSALDAESEHLVQDAMDSLMRGRTVLVIAHRLSTVKTADTVAVVCDGEIVESGRHEELLSRDGVYTALRSRVAQHSKYKPVFQTPSQSSLKTIIKDNMNKFFSRKLASRLSNSYGNSHYCRDCASFSTQVLTGNQNYFYGSFITRPVKDHSRSWSSHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDHRWSGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLITSAFSHVEIGHIVSNMIGLYFFGMNIGRVFGPEFLLGLYLAGAIGGSAFYLAQHLFQASSSKSRPFWGKDPARAQGLGASGAVNAIMLLDIFLFPKSTLYLEFFIPVPAILLGIFLIGKDMLRILENDSQISGSAHLGGAAVAALAWARVRRGRF 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 433845 443738 - Cp4.1LG20g00890.1 Cpe20g00083 486712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00083 928 Gene3D ABC transporter type 1, transmembrane domain 108 338 IPR036640 GO:0005524|GO:0016021
Cpe20g00083 928 ProSitePatterns ABC transporters family signature. 470 484 IPR017871 GO:0005524
Cpe20g00083 928 SMART AAA_5 368 550 IPR003593 -
Cpe20g00083 928 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 5 108 IPR039421 -
Cpe20g00083 928 SUPERFAMILY ABC transporter transmembrane region 47 320 IPR036640 GO:0005524|GO:0016021
Cpe20g00083 928 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 108 571 IPR039421 -
Cpe20g00083 928 CDD ABC_MTABC3_MDL1_MDL2 341 564 - -
Cpe20g00083 928 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 109 307 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe20g00083 928 Gene3D - 724 926 IPR035952 -
Cpe20g00083 928 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 5 108 - -
Cpe20g00083 928 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 108 571 - -
Cpe20g00083 928 SUPERFAMILY Rhomboid-like 728 924 IPR035952 -
Cpe20g00083 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 565 IPR027417 -
Cpe20g00083 928 MobiDBLite consensus disorder prediction 1 26 - -
Cpe20g00083 928 Pfam ABC transporter 359 498 IPR003439 GO:0005524
Cpe20g00083 928 Pfam ABC transporter transmembrane region 108 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe20g00083 928 Pfam Rhomboid family 765 923 IPR022764 GO:0004252|GO:0016021
Cpe20g00083 928 Gene3D - 339 573 IPR027417 -
Cpe20g00083 928 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 341 567 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00083 - - - cmax:111495393 996.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00199 Cpe-Chr15:1651350 Cpe20g00083 Cpe-Chr20:433845 2.44E-79 dispersed
Cpe20g00083 Cpe-Chr20:433845 Cpe13g00944 Cpe-Chr13:7948987 1.82E-91 dispersed
Cpe05g00691 Cpe-Chr5:4236234 Cpe20g00083 Cpe-Chr20:433845 7.95E-78 transposed
Cpe09g00526 Cpe-Chr9:3524694 Cpe20g00083 Cpe-Chr20:433845 2.34E-09 transposed
Cpe14g00618 Cpe-Chr14:3912964 Cpe20g00083 Cpe-Chr20:433845 8.82E-13 transposed
Cpe16g00695 Cpe-Chr16:7165870 Cpe20g00083 Cpe-Chr20:433845 6.75E-58 transposed
Cpe20g00083 Cpe-Chr20:433845 Cpe09g01165 Cpe-Chr9:9879263 4.87E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g453 . . . . . . . . Cmo13g01111 . . . . . . Cpe20g00083 . . . . . . . . . . . . . . . . Cone16ag0216 . . Lsi02g00129 Csa01g00612 Chy12g01488 Cme12g01929 . . Bda11g01765 . . . . . Sed08g2128 . . Cma13g01067 . Car13g00902 . . . Bhi08g01072 Tan05g2345 Cmetu12g1181 Lac10g0175 Hepe07g2452 . . Cla04g01146 Cam04g1200 Cec01g1712 Cco01g1756 Clacu04g1227 Cmu04g1207 Cre01g1504 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00083 Cpe_Chr20 FPKM 1.621295 1.473465 6.343393 6.735509 1.116833 1.62479 1.550323 0.854724 0.832259 0.619072