Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00085 ATGCCGATGGAAGGCGGCTTCGAACAGACCCTTCAAGATGGAAAACTTTATAGACAAGCTGCAAGTGCTGCTGCTTCAGCTTCAAGGACACCGCTGAATGTTGATGTTCCGCCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGAGGAGATGTTAAGAGGGAGTCCTGCTTCTGCATTGTACGAATTTGGTTCATCAGTGCCCTCTACATTTGGGTCTACACAGCCCTCTCGTGCTTCTACCATCGACTTTAGCACTGTGCAGGATACAAAAGGTTCGTCGAAGAATTTTCCAAAGCACGAGACTCGACATCTTTCCGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGCGCTGACGGGAGATTTGTTGCCACAGGAAGCGCGGATATGTCGATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATTCCAAAGATGGTCCTGTCCGACCTGTTATAAGGACGTTTTACGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCAGACTATAAAGTTCTTTGACTTCTCCAAATTGACTGCTAAGAAAGCATTCAGAGTTATCCAGGTTTTGCTTGTGTCTTATTCTACATTTGGCTGCAGCTTTTACTTCTTTTACTTCAGAAAGCACTCTCTTGAATTCTTCCTTCTACCTCTGTTTGTCATTAAGGATACCCATAACGTGCGTTCGATATCGCTTCATCCTTCAGGAGATTATCTTTTAGCGGGAACGGATCATCCAATTGCCCACCTGTATGATGTCAATACTTTTCAGTGCTTTCTTTCTGCAAATGTTCCAGAAATAGGAAATAGCGGAGCCATAAATCAGGTCAGGTACTCAGCAACAGGCAGTATGTATGTCACTGCTTCAAAAGACGGTGCAGTTCGTTTATGGGATGGCGTTAGTGCGAAATGTCTTCGCTCCATTGTTAGTGCACACGGTACAGCGGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTACGTTCTTTCTTGTGGAAAGGACTCGACTGTAAAGCTCTGGGACGTGGGGACGGGAAAACTGGTCAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTGTTCAATGATAACGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAACGAGATTGTTATCTGGGATGCTCTGACAGCAGAGCGAGTAGCAAGGTGGCCTTCGAACCACATCGGTCCACCCCGATGGCTCGAGCACTCACCAACAGAATCAGCCTTCATTTCGTGCGGGACTGATAAATCAATACGCTTTTGGAAGGAAACTCTCTAG 1374 45.05 MPMEGGFEQTLQDGKLYRQAASAAASASRTPLNVDVPPNKLMELVAKGLAVEKEEMLRGSPASALYEFGSSVPSTFGSTQPSRASTIDFSTVQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDSKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDQTIKFFDFSKLTAKKAFRVIQVLLVSYSTFGCSFYFFYFRKHSLEFFLLPLFVIKDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNSGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDNEEFVLSIDEPSNEIVIWDALTAERVARWPSNHIGPPRWLEHSPTESAFISCGTDKSIRFWKETL 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 455233 460873 - Cp4.1LG20g00880.1 Cpe20g00085 486714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00085 457 ProSitePatterns Trp-Asp (WD) repeats signature. 353 367 IPR019775 -
Cpe20g00085 457 SUPERFAMILY WD40 repeat-like 102 454 IPR036322 GO:0005515
Cpe20g00085 457 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 17 456 IPR044633 GO:0005848|GO:0031124
Cpe20g00085 457 CDD WD40 106 454 - -
Cpe20g00085 457 Pfam WD domain, G-beta repeat 107 141 IPR001680 GO:0005515
Cpe20g00085 457 Pfam WD domain, G-beta repeat 292 322 IPR001680 GO:0005515
Cpe20g00085 457 Pfam WD domain, G-beta repeat 327 366 IPR001680 GO:0005515
Cpe20g00085 457 Pfam WD domain, G-beta repeat 163 198 IPR001680 GO:0005515
Cpe20g00085 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 200 - -
Cpe20g00085 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 331 IPR001680 GO:0005515
Cpe20g00085 457 Gene3D - 241 456 IPR015943 GO:0005515
Cpe20g00085 457 MobiDBLite consensus disorder prediction 91 110 - -
Cpe20g00085 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Cpe20g00085 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 375 IPR001680 GO:0005515
Cpe20g00085 457 Gene3D - 74 214 IPR015943 GO:0005515
Cpe20g00085 457 PRINTS G protein beta WD-40 repeat signature 441 455 IPR020472 -
Cpe20g00085 457 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Cpe20g00085 457 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Cpe20g00085 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 151 IPR001680 GO:0005515
Cpe20g00085 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 322 - -
Cpe20g00085 457 SMART WD40_4 369 411 IPR001680 GO:0005515
Cpe20g00085 457 SMART WD40_4 414 454 IPR001680 GO:0005515
Cpe20g00085 457 SMART WD40_4 159 198 IPR001680 GO:0005515
Cpe20g00085 457 SMART WD40_4 325 366 IPR001680 GO:0005515
Cpe20g00085 457 SMART WD40_4 238 276 IPR001680 GO:0005515
Cpe20g00085 457 SMART WD40_4 103 142 IPR001680 GO:0005515
Cpe20g00085 457 SMART WD40_4 279 322 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00085 K14406 CSTF1; cleavage stimulation factor subunit 1 - csv:101206503 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00085 Cpe-Chr20:455233 Cpe17g00855 Cpe-Chr17:6641703 5.04E-18 dispersed
Cpe20g00085 Cpe-Chr20:455233 Cpe10g00519 Cpe-Chr10:3042569 8.70E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00085 Cpe_Chr20 FPKM 0.0 0.0 0.0 0.0 1.657795 2.012908 0.0 0.377709 0.0 0.0