Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00086 ATGCAGGGAGCTGAAGCTGTTGATCAAGGAGATTGTTCCACATTTACAGAAACTATGCCACACAGCTGCAAACGAGACCCATTGGTGGTTGACTTGCTTCCTGGTGCTCCTTATAACCAACAGGTAGCTAGGTGCTGCAAAGGTGGTGTCTTGACCTCCTGGGGTCAAGATCCTTCTTCTGCTGTCTCTGCCTTCCAATTCACTGTTGGTCACTCTGGTAATTCAAACAAAACACAACGTGGAACATGCCACAGGAAGGAATCAGATCTTGAAAGCGTTACGGGGTTGAATGCTCCATTGCTGCAGTGCACGACACATAACTGTCCCATTCAAGTCCACTGGCATGTCAAGGAAAACTACAAGGGGTATTGGCGGCTCAAGATAACCATCACCAATCTCAACTATCGACTTAACTATTCACAATGGACTCTGGTCGTGGAGCACCCAAATTTCAGCAACATAATGGAAGTTTATAGCTTTTCCTATAGGCCAATTGCCCCCTTCAGCTCTAACAACGGTACAGCTCTGTTCTATGGCTTGAAATCTGTGAATGATGTGCTGCTTGAAGCAGGGCCAAATGGAAACGTTCAGTCAGAGATGATTTTGCAGAAGGATTCAGCCTTTACGTTGGAACAAGGGTGGGCTTTCCCTCGAAAAGTGTACTTTGATGGAGATGAATGTGTGATGCCGCTGCCTGAATCCTTCCCCTTCCTACCCAACCTGGCTAATGCAAATCCAGTGCCATTGTCAGCGCTAGCTTGCATTTTGGTTGCCATCTTCCTTGCGCTGTTATCTTAG 798 46.87 MQGAEAVDQGDCSTFTETMPHSCKRDPLVVDLLPGAPYNQQVARCCKGGVLTSWGQDPSSAVSAFQFTVGHSGNSNKTQRGTCHRKESDLESVTGLNAPLLQCTTHNCPIQVHWHVKENYKGYWRLKITITNLNYRLNYSQWTLVVEHPNFSNIMEVYSFSYRPIAPFSSNNGTALFYGLKSVNDVLLEAGPNGNVQSEMILQKDSAFTLEQGWAFPRKVYFDGDECVMPLPESFPFLPNLANANPVPLSALACILVAIFLALLS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 461896 463428 - Cp4.1LG20g00910.1 Cpe20g00086 486715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00086 265 PANTHER PROTEIN COBRA 1 80 IPR006918 GO:0010215|GO:0031225
Cpe20g00086 265 PANTHER COBRA-LIKE PROTEIN 1 80 - -
Cpe20g00086 265 PANTHER COBRA-LIKE PROTEIN 83 260 - -
Cpe20g00086 265 PIRSF COBRA 81 265 IPR006918 GO:0010215|GO:0031225
Cpe20g00086 265 PIRSF COBRA 1 86 IPR006918 GO:0010215|GO:0031225
Cpe20g00086 265 Pfam COBRA-like protein 1 78 IPR006918 GO:0010215|GO:0031225
Cpe20g00086 265 PANTHER PROTEIN COBRA 83 260 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00086 - - - brp:103847531 313.153
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe18g00714 Cpe20g00086 CCT
Cpe18g00714 Cpe20g00086 ECH
Cpe04g01448 Cpe20g00086 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00714 Cpe-Chr18:7039262 Cpe20g00086 Cpe-Chr20:461896 1.96E-23 dispersed
Cpe18g00713 Cpe-Chr18:7036903 Cpe20g00086 Cpe-Chr20:461896 1.57E-30 wgd
Cpe02g01399 Cpe-Chr2:12223631 Cpe20g00086 Cpe-Chr20:461896 2.60E-29 wgd
Cpe20g00086 Cpe-Chr20:461896 Cpe03g00975 Cpe-Chr3:7848729 1.43E-30 wgd
Cpe20g00086 Cpe-Chr20:461896 Cpe04g01448 Cpe-Chr4:11568796 7.04E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g445 . . Bda06g00512 Bda15g00631 . . . Bma12g00957 . . Cma10g00288 Cma11g00220 Car10g00270 Car11g00198 Sed08g0289 Cpe20g00086 Cpe04g01448 Bhi02g00080 Tan09g2022 Cmetu02g1379 . Hepe09g0286 . . Cla06g01530 Cam06g1687 Cec06g1749 Cco06g1747 Clacu06g1654 Cmu06g1601 Cre06g2413 . . . . Lsi02g00135 Csa01g00618 . . . . . . Bpe07g00746 . . Bma08g00250 . Cmo10g00306 Cmo11g00223 . . . . . Cpe18g00714 . . . . . . . . . . . . . . Lsi06g01401 Csa01g00340 Chy02g02402 Cme02g01812
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00086 Cpe_Chr20 FPKM 2.395154 2.410174 10.902452 12.944509 3.730668 3.92308 4.713802 10.355548 9.995796 10.880646