Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00089 ATGGGGAGGGGAAGAGTGCAGCTGAAGAGGATCGAGAACAAGATTAATATGCAAGTCACCTTCTCCAAGAGAAGGTCTGGTTTGCTGAAGAAAGCTCATGAGATTTCAGTTCTGTGCGATGCTGAGGTCGCTCTTATCGTCTTCTCCACCAAGGGCAAGCTGTTTGAATACTCCACTGACTCTTGCATGGAGAAGATCCTTGAGCGTTATGAGAGGTACTCGTACGCGGAGAGGCGGCTTGTTGCAAATGATAGCCAATCAAACGGAAATTGGACTCTTGAATATGCGAAGCTTAAAGCCAGAATAGAGGTTCTTCAGAAGAACCACAGGCATTTCATGGGGGAAGATCTTGAGTCCTTGAGCCTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATGTAAGAGCCAGGAAGAACCAACTCATGCATGAATCCATTTCAGATCTTCAGAAAAAGGACAAGGCGCTTCAGGACCAAAACAACATTTGTCCTTACCCAACACACGCCACCGGACACGAAGAATCCGCCGCCAACCACGACAGGTCCGGCACCCTCCTGCCGCCCTGGATGCTCGGCCACCACCTTGGTAACTAA 609 48.28 MGRGRVQLKRIENKINMQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDSQSNGNWTLEYAKLKARIEVLQKNHRHFMGEDLESLSLKELQNIEQQLDSALKHVRARKNQLMHESISDLQKKDKALQDQNNICPYPTHATGHEESAANHDRSGTLLPPWMLGHHLGN 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 477882 481111 + Cp4.1LG20g00760.1 Cpe20g00089 486718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00089 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 169 - -
Cpe20g00089 202 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 169 - -
Cpe20g00089 202 MobiDBLite consensus disorder prediction 173 192 - -
Cpe20g00089 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe20g00089 202 Coils Coil 88 108 - -
Cpe20g00089 202 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe20g00089 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe20g00089 202 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cpe20g00089 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe20g00089 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe20g00089 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe20g00089 202 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cpe20g00089 202 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cpe20g00089 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe20g00089 202 Pfam K-box region 84 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe20g00089 202 Coils Coil 122 145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g01155 Cpe20g00089 CCT
Cpe09g01155 Cpe20g00089 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01156 Cpe-Chr9:9836724 Cpe20g00089 Cpe-Chr20:477882 1.03E-124 dispersed
Cpe11g00399 Cpe-Chr11:2202574 Cpe20g00089 Cpe-Chr20:477882 6.39E-28 dispersed
Cpe17g00325 Cpe-Chr17:2207273 Cpe20g00089 Cpe-Chr20:477882 1.56E-19 dispersed
Cpe17g01070 Cpe-Chr17:8101437 Cpe20g00089 Cpe-Chr20:477882 6.32E-56 dispersed
Cpe02g01396 Cpe-Chr2:12203422 Cpe20g00089 Cpe-Chr20:477882 3.21E-80 wgd
Cpe20g00089 Cpe-Chr20:477882 Cpe03g00969 Cpe-Chr3:7585925 1.41E-81 wgd
Cpe20g00089 Cpe-Chr20:477882 Cpe09g01155 Cpe-Chr9:9833003 4.11E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51093 PF01486 K-box 1.30E-29 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00089 K09264 - csv:101207225 324.709