Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00102 ATGGCTTTCCTCCTCCTCTGTTCTGCTTCCTTCAAAGCTTTCCTCCTCCTCTTCCTCCTCTCCTTCCACTTCTTCTCCGCGGTTTGCACCGAATTCCTCGTCGGCGATGATGATGGATGGGAAGTCCCTGATTCAAAAGAAACTGGCAAATACAACAAATGGGCCTCCCGTAATAGATTCTCTGTTCATGACACTGTCAATTTCAGATACAAGAAGGATTCGGTGATGGTGGTGACGGAGGAAGAGTACAAGGAGTGCCTTTCTTCGAAGCCGCTGTTTTATGACAACAGTGGCAACAGTGTTGTGAAACTTGACAGACCAGGGCTGTTCTATTTCATCAGTGGGGTTACGGGGCATTGTCAAAAAGGTCAGAGAATGATAATCAAAGTGTTGGAACCTGTCAGCCCTCCTCACCCACCCACTCCTCCACCCCATGATACCAAGAAAGCTGCTGCAGCTAATTTACTCTCTGTTTCATCTCCAATCTTGGGGATGTTCTTCATGTTCGTTGCTTCGTTTCTGTTTATTTGA 531 46.89 MAFLLLCSASFKAFLLLFLLSFHFFSAVCTEFLVGDDDGWEVPDSKETGKYNKWASRNRFSVHDTVNFRYKKDSVMVVTEEEYKECLSSKPLFYDNSGNSVVKLDRPGLFYFISGVTGHCQKGQRMIIKVLEPVSPPHPPTPPPHDTKKAAAANLLSVSSPILGMFFMFVASFLFI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 543297 543924 - Cp4.1LG20g01030.1 Cpe20g00102 486731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00102 176 Gene3D - 28 135 IPR008972 -
Cpe20g00102 176 SUPERFAMILY Cupredoxins 29 131 IPR008972 -
Cpe20g00102 176 ProSiteProfiles Phytocyanin domain profile. 30 132 IPR003245 GO:0009055
Cpe20g00102 176 Pfam Plastocyanin-like domain 44 124 IPR003245 GO:0009055
Cpe20g00102 176 PANTHER BLUE COPPER PROTEIN 13 160 IPR039391 GO:0009055
Cpe20g00102 176 CDD OsENODL1_like 30 131 IPR041846 -
Cpe20g00102 176 PANTHER EARLY NODULIN-LIKE PROTEIN 6 13 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02310 Cpe-Chr1:19473503 Cpe20g00102 Cpe-Chr20:543297 8.84E-44 dispersed
Cpe09g01150 Cpe-Chr9:9813614 Cpe20g00102 Cpe-Chr20:543297 1.07E-62 dispersed
Cpe12g00665 Cpe-Chr12:6443138 Cpe20g00102 Cpe-Chr20:543297 5.40E-31 dispersed
Cpe12g00669 Cpe-Chr12:6454172 Cpe20g00102 Cpe-Chr20:543297 5.40E-31 dispersed
Cpe20g00102 Cpe-Chr20:543297 Cpe17g00141 Cpe-Chr17:880581 2.78E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00102 - - cmo:103495780 219.55