Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00103 ATGTCGCAGGATTCGGAGAAGAGGTTTCATTCCATCATGGACAAGCTCTTTCAGAATGCACCAGCCACTCCAAACTCAAATTCTGCATCTTCCCCGTCCTCCAGTCCATCCGGAGGACAATTGTCGAGAGGAAGAAAGCGGCCATATTCTTCATCTGCTCTGGTAGTGGGAGAGCTGAGGACAAAAAGTGATGTAATTGAGGCATTGCAGAAGCATTCTGCAGCTTCTGCTGGATCCTCTGATGCTCCGTTATGCAGGCCTTGGGACCGTGGAGATCTTTCTAAAAGACTAACCACATTCAAGTCGATGACATGGTTTGGTAAACCTAAGGTGGTAAATCCTATAAATTGTGCTAGAAGAGGTTGGATCAATGTAGATATGGATACTATTGCCTGTGAATCGTGCGGAACACGTCTCCTTTTCTCTACTCCATCTTCCTGGAATCAGCAACAAGTTGAGAAGGCCGCTTTGGTATTTAGCTTAAAGTTGGATAATGGGCACAAGTTACTCTGTCCCTGGATAGATAATGCCTGTGATGAAGCATTGGCTAATTTTCCTCCTACTCCTCCTCCAACTTTAGTTAATAAATTTAGGGAGCGCTGTTCTATGTTATTACATCTTTCAGCTCTCCCTGCTATTTCGTCTTCATTTGTCAAATGGATGAAGAGTCACCACCTCAAGAAATTTCTTGAAGAATTATCCTTGGAGGAATTTGGTAATGAATCTCATAAAAAATCTGAAATCGAGTACCTAGGAGATGGACAGGACTCAGAAACTGCTAAAGTATATTATCAGGCTCTAAAGCTGATTAGCTTGTTTGGATGGGAACCTCGTTCACTGCCGTATGTAGTTGACTGCAAGACAGGGTCCGACCAATCTCTCAAGAAATCCACCAATTTGGTTTCACATCCTACTATCGATCTATACACTGCTGCCATCAAAGAAAATGTAGATGGGAATAGAATTGCTGAAATTTCAAGTGAACTGCAATCTCAGCCCAATTCTGTTGTTTTAGATTGCCGGCTCTGTGGAGCTAGCGTTGGATTATGGGCATTCCACACAATTCCTAGACCTGTGGAAATCATCAGATTGGTTGGACCCACTGAATTGAACAGTGAGTCAGGCACTCATGATTCAGGCAATAAAAGTGTCATCAATCAAGCAGGTATTGCTAATGTTGAAATGTCAAAATTTACTTCAACAATTGCAGGGGGACCTACCCCTGCACGACAGAGTTTCAAGGCCACCATCACTTTGCCTGTTATTGGCCAAAATTTGAGGGCGAGGTTATTCAATGATGAAAAAATTAGTGATCGGATGTATACTGACCAAGAAATGGTCCAAGCCGATTCCTTGGATAAAAATATGTTACAAGATAGCAAAAGCAACGAAGATAGCACCCTTACTGGACAAATTGATCAGCAGAATCAAACACTTGATCCTAGATGCAGTACTTCTGGTGATGATCAGACCCCTTTGTCGGAAGGTGTGAGTGTTACTGATCAGGGAACCTTACCTGAATCTTGTTTGAATGGTTCAACTGAGGAAACTCAAGTAAAGAGGACAGAGATTGTTCCTGCTCAGGAAATTGAAGTGGTGGAGAATGCTGAGGATTCAATACAGTCGGATTCTGGTAACAAAGCAGAAGATCTGCATCGTGGCCCTTCTCCAGTCAAAAAGTCTTTGATGTCAACAGATGCTGTTATGATCACAAGTAGTGAATGCAGTGAAAAGAAGTTGCCTTCTGATGTCTCGGACCAGTGTGATCCACAACAGGTTTCAGAAAATGATACCTCAAATAGCAAAGAGGTTTCTTTGGACTTACAGGTGACCCCATATAAATCTTCGTGCCCTGAAGTTGATACAAATACAGATATTGCCAGTGAGAACGAATCAACAAAAGACAAACTTTGTTCTGATAACCACAATACCTCAGAAAACCAGGACCATGAAGGAGGTGATGCGAATGACAAAATGAATACGTCTGTGAACAGCGAGCATATTGGCCATGGTGGAGAGGATTATCCCAAGGGTGTTCCGTCAGGTGGTGTAACGGAGTTCGATCCAATCAGGCAGCATAGGCATTTTTGTCCTTGGATTGCCACAGGAAATGTGGCACCTGGTTGGAAACTAACCCTAACTGCTTTACAGCGTGAAAATAGCTCTTCACCACATTCACCTAAGAACTCTCCATCAGCGTCTCTTATTAAGGTCGATGACCCGGTTACATCGGTTCGAAATCTATTCACATCTTCTGCAAAGAAATTGAAAAGCAGTCTAGTTTCCAACGAGAGCACCAAGCGCTAG 2307 42.96 MSQDSEKRFHSIMDKLFQNAPATPNSNSASSPSSSPSGGQLSRGRKRPYSSSALVVGELRTKSDVIEALQKHSAASAGSSDAPLCRPWDRGDLSKRLTTFKSMTWFGKPKVVNPINCARRGWINVDMDTIACESCGTRLLFSTPSSWNQQQVEKAALVFSLKLDNGHKLLCPWIDNACDEALANFPPTPPPTLVNKFRERCSMLLHLSALPAISSSFVKWMKSHHLKKFLEELSLEEFGNESHKKSEIEYLGDGQDSETAKVYYQALKLISLFGWEPRSLPYVVDCKTGSDQSLKKSTNLVSHPTIDLYTAAIKENVDGNRIAEISSELQSQPNSVVLDCRLCGASVGLWAFHTIPRPVEIIRLVGPTELNSESGTHDSGNKSVINQAGIANVEMSKFTSTIAGGPTPARQSFKATITLPVIGQNLRARLFNDEKISDRMYTDQEMVQADSLDKNMLQDSKSNEDSTLTGQIDQQNQTLDPRCSTSGDDQTPLSEGVSVTDQGTLPESCLNGSTEETQVKRTEIVPAQEIEVVENAEDSIQSDSGNKAEDLHRGPSPVKKSLMSTDAVMITSSECSEKKLPSDVSDQCDPQQVSENDTSNSKEVSLDLQVTPYKSSCPEVDTNTDIASENESTKDKLCSDNHNTSENQDHEGGDANDKMNTSVNSEHIGHGGEDYPKGVPSGGVTEFDPIRQHRHFCPWIATGNVAPGWKLTLTALQRENSSSPHSPKNSPSASLIKVDDPVTSVRNLFTSSAKKLKSSLVSNESTKR 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 544733 550457 + Cp4.1LG20g00940.1 Cpe20g00103 486732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00103 768 MobiDBLite consensus disorder prediction 718 738 - -
Cpe20g00103 768 MobiDBLite consensus disorder prediction 585 627 - -
Cpe20g00103 768 MobiDBLite consensus disorder prediction 718 737 - -
Cpe20g00103 768 MobiDBLite consensus disorder prediction 458 521 - -
Cpe20g00103 768 MobiDBLite consensus disorder prediction 576 686 - -
Cpe20g00103 768 MobiDBLite consensus disorder prediction 458 564 - -
Cpe20g00103 768 MobiDBLite consensus disorder prediction 1 53 - -
Cpe20g00103 768 Pfam C3HC zinc finger-like 87 211 IPR012935 GO:0008270
Cpe20g00103 768 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 1 756 - -
Cpe20g00103 768 MobiDBLite consensus disorder prediction 18 47 - -
Cpe20g00103 768 MobiDBLite consensus disorder prediction 628 656 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00103 - - - csv:101206120 1167.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00745 Cpe-Chr9:6939635 Cpe20g00103 Cpe-Chr20:544733 3.14E-62 dispersed
Cpe20g00103 Cpe-Chr20:544733 Cpe20g00540 Cpe-Chr20:3144883 3.01E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g375 . . . . . Bpe13g00337 Bma06g00005 . Cmo13g01086 . . . . . . Cpe20g00103 . . . . . . . . . . . . . . . . Cone16ag0270 . . Lsi02g00158 Csa01g00643 Chy12g01459 Cme12g01899 . . . . . . . . Sed08g2160 . . Cma13g01045 . Car13g00878 . . . Bhi08g01035 Tan05g2298 Cmetu12g0465 Lac10g0210 Hepe07g2419 . . Cla04g01115 Cam04g1168 Cec01g1679 Cco01g1727 Clacu04g1196 Cmu04g1175 Cre01g1474 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010799 0 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00103 Cpe_Chr20 FPKM 0.0 0.0 35.719414 33.841576 168.04126 174.982224 170.463776 5.556057 4.775136 5.500742