Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00105 ATGGATTTGAGGAAAATCGTGGTGATTGTTGAAGACGTTGAAGCAGCTAGAACGGCATTGAAGTGGACGCTCAATAACCTAATGCGCTACGGCGATTTGATTACTCTTCTCCATGTATTTCCGACTACAAGATCCAAAAGCGCTTCCAAACTTCGTCATCTCCGATTGAACGGCTATCAATTAGCCCTATCCTTCAAAGACCTCTGTACCACTTTCCCCAATACAAAGGTAGAGATTATTGTGACGGAAGGCGGCGGCGGCGACGAAGAAGGTAGAAAGATCGCAACCGTGGTTAGAGAGATTGGAGCTTCTGTGCTTGTGGTTGGCCTCCATGATCGCAGCTTTCTGTACAAAGGATTGAGTAGTCAAAGTTTCTGGGGAATTGCTGAAGAAATGGTCAATTATGTTAGGATGGCTGTGGAGGAAGATGATATAGCAAGGAACTTCAAATGTAAAGTTCTGGCAATCAAGAGCTCAACAGAAGAACCACAGAAAACCAAAAACGTGGAGGTTATAGCAGCAGCAGCGGATACGAGCAGTTCAACAAACATGGACTTTTCCCAGATCGAGATTGCCAAATTACAAGCTCCTGAAATTCCTCCGCAGAAAATTCCATACAGAATCTGCCCCGACCCTTCTGCCATTATTTGGAGATCCAAGAAATCAAGAACAAGGTGGACCTTGTGA 687 44.83 MDLRKIVVIVEDVEAARTALKWTLNNLMRYGDLITLLHVFPTTRSKSASKLRHLRLNGYQLALSFKDLCTTFPNTKVEIIVTEGGGGDEEGRKIATVVREIGASVLVVGLHDRSFLYKGLSSQSFWGIAEEMVNYVRMAVEEDDIARNFKCKVLAIKSSTEEPQKTKNVEVIAAAADTSSSTNMDFSQIEIAKLQAPEIPPQKIPYRICPDPSAIIWRSKKSRTRWTL 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 554937 557788 + Cp4.1LG20g00950.1 Cpe20g00105 486734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00105 228 CDD USP_Like 5 116 - -
Cpe20g00105 228 Gene3D HUPs 2 171 IPR014729 -
Cpe20g00105 228 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 225 - -
Cpe20g00105 228 Pfam Universal stress protein family 4 120 IPR006016 -
Cpe20g00105 228 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00105 - - - csv:101206357 313.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00105 Cpe-Chr20:554937 Cpe11g00881 Cpe-Chr11:7131398 6.82E-06 dispersed
Cpe20g00105 Cpe-Chr20:554937 Cpe20g00090 Cpe-Chr20:481830 3.72E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g373 . . Bda06g00495 . . . . Bma12g00944 Cmo13g01084 . . . . . . Cpe20g00105 . . . . . . . . . . . . . . . . . . . Lsi02g00371 Csa01g00850 Chy12g01456 Cme12g01896 . Blo15g00358 . . Bpe07g00736 . . . . . . Cma13g01043 . Car13g00875 . . . Bhi08g01202 . . . . . . Cla04g01112 Cam04g1164 Cec01g1675 Cco01g1723 Clacu04g1192 Cmu04g1172 Cre01g1470 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009831 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00105 Cpe_Chr20 FPKM 0.473958 0.355282 1.075107 0.937091 1.163016 1.618127 1.568538 1.0729 0.669029 1.070653