Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00113 ATGGCTCGGATCTTTGAGTATTTTGTGGTTTGTGGGATCGGGCCGGAGATTCGGACTCTAGATGGGAACAAGGGATTTCATGGATTCAGTCACTTGTATCTAGCGTCTCTTCTTGACCAGTATCCTCCTTCCAATCATTCTCTTTATCCTCCTCCACCACCTCAGCTCGCGACGTTTAGAGGTGTTGGATTTTTCTATCGCTTGATTAACCGGAGACTGCATCTGGATCGCATTTTGCAGTGTGTTCTACCAGCTGGGGTTGAGTTTTTTTCATCGGGTTTTGATTCCAGTGACGCCTCTACTTTTCCGCGGAGTTATCCGATTGTTTTGACTGAGGGCGATGGGTCAAAAATTTATGTCAGTTGCATTGCTTTTAGAGACCCTGTTAGTGAGGATATTGCCGAAGCCTACCGCCTTCCACCAAATTCTTATGCTGATAAATGTATCTGTATTGTTTCTCGTTCACCCAGCTTCCATGTCCTTAAAGATGCGCTGGAGGAATTATTTGCTTTGTGCTTCTCCAGCAGTGGGAGTAGCAAGCCTCTGTGGGACATCATAGCATTCATGATCTCCAATGTACCTCTGCCGACTCCTGGGAAGGAACGGATTTTGTTTGGCATTGAGAATTGTCTTCTTTCCGTTCAGGCTCCACCAAAGGATGGGCTTCCCCATGCCGATATTTCGTTTCAGCCGCTTATGCAGTGCTTGGATTTGGAAAATTTAATCAAACTTTTCACTGCCGTCTTGCTGGAGAGGAGGATTCTTCTTCGATCAAACAAGTATTCACTTTTAACTCTTGTATCAGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGACTCTAACCCAAGCTTTCTATGTTGTCCTGAAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTATATTGATGCTCCCACACCGTATATGATGGGTCTTCATTCCGGCGTTGATACATCCTATCTGGCAATGGATGGTGTTGTTGTAGTGGACCTTGAGTATAATTGTATCACAACCACTGAGGACATACCCCCTATTCCAGAACCAGAGCTCGGATCTTTGCGTAGCGAGCTGATGAAATTATTATATCCCAATGTTGTCAGCATAGATCAAATGAGGTCTGATTTGCGTAGCTCGTGTGAGCAGTACCCTAGAGGTATCTGCAAGCCTTGGGGAGAAGACCATGACCTTCAGCTTAGCCAATATGCAATGTATATGACTATTATATGCCTGAATGATGGTATAACTCAGTTCCTGGAGTCCCAAGGGTTCTTAGACTATCTAGAGAGATGCATAGGTTCTGATGAAAGTAATAACAACATTCTTGACAAGTTACAAGATGCAATTGGGAGGGGTCAAAATCCTCTTTCAATTCTTCCGTCCTCATTGGCTGAACCTGACATCATAACAATTTCTGACCCTGATATGGGATCATCAGGTTCTGGTGCGAAGTACACTTATGATAGATTTCCTTCAAACGTCAGAACTGAGGAGCAGGAAGAAAAGAGACAACAAATACTAGCAGCAGTGCGTGGAGCTTTTGAATATTCTGGAAAGCACAACCCTAATTCACCTTCTATGCTGATGGGCAGGGATCCAAAAGCACCAAGCCTCAGTCCAATGGAGAGGGCTGCCGAAAGAGAGCGCATGGTTTTGGACATAAAAGTCAAACTACAGGGTCTCTGGCTACGTCTTCTGAAACTGGGTGCAACTGATGATCCTCTTTCTTCTTTTGAATATGGCACTATTCTCGCTTTGATCGAGTCTGATGCAGAGGGAATTGGTGGTAGTGGGTTTGTTGAGTGTATTAGAGAGCACATAAATACTGGATGGCTTTGTCAGTTAACCGATGAACAGTTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGTCGTGCAACTTCACGAAATGATATATTGACAATTAGGGATGCCCTTGAAGTGTCTGGTGAAATATACAAGAAAGACCCTAATAATGTTCCTGATTACATCCAACGCCATCTTATTTCTTTATCTATATGGGAGGAGTTAAGGTTTTGGGAAGGCTATTTTGATTATTTGATGGAACAGTCTTCAAATAAATCCGCCAATTATACATCTCTGGTTTCTGCACAGCTAATTGTTATGGCATCGCATATGGCTGGACTTGGGCTTCCTGACATCGATGCTTGGTACATGATTGAGACAATTGCGGAGAAAAACAGCATAGGATACAAACAACTTGTAAGTCAAATGATTTTATCGGATTCATCATTATCTGCGTATGCATTACAGAACTGTTCACATCCACCAATGCTTGCTTCATCTGCAATTAAGAAAAGTTCCAAAGATGGCTGCAGTTTGGAAAGTGTTAAACTCAGAATAGGTCTTGCAGTTGCATTACCATATGAGTTCTCTCATCTACAATCCTACTTTAATGATTTTCAGATAAAGCTTCGAGGTTTCTTATCCCATATCCAGCAGCTGCGCATTAGTTATTGGGGACTCTCTGCTGTTAAGTCTCAATCCACATCTGCCCATGCAACGCCATCTCCGCATCCCAAAGATGGATCTGATCAGAATCAGCAGCCTGCTGAGGCTTCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTCAGCAGGGACACATCTGCAAGGATTAACTTGGGTCGTAGTGGCCGTTGGACTGCTGATGTCCCGACCGAGAGTGGTACTTCTCAAAGACAAGATTTACCCTCAGCTGGGCAGAAAAAAGTTCAAAGCAATATTCGCGTTCTTAGGGGTCATAGTGGAGCTGTGACAGCACTTCATTGTGTTTCAAAAAGGGAGGTGTGGGACTTGGTGGGAGACCGTGAGGATGCAGGTTTCTTCATTAGTGGAAGCACAGACTGCTTGGTCAAGATATGGGATCCAAGTCTTCGTGGTTCTGAACTGCGAGCAACTTTAAAGGGTCACACAGGACCTGTTCGTGCGATTAATTCTGATCGAGGAAAAGTAGTTTCTGGGTCTGATGATCACTCAGTTATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCACAGGTCAGTTGTGTGCGTATGCTATCAGGTGAACGTGTCCTTACCGCTGCGCATGATGGAACCGTGAAGATGTGGGATGTCAGAACTGATACTTGTGTAGCAACTGTTGGTCGTTGCTCTAGTGCAGTTATATGCATGGAATATGATGACTCTACGGGGATATTGGCTGCTGGTGGTAGAGATACAATAGCAAATATCTGGGACATCCGTGCTGGCCGGCAAATGCACAAGCTCTTAGGTCATACGAAATGGATACGCTCAATAAGAATGGTAGGAGACACTATTGTTACTGGTAGTGATGATTGGACCGCTAGACTGTGGTCTGTTTCTCGAGGAGCATGTGATGCTGTTCTAGCATGCCATGCTGGCCCAATATTGGCCGTAGAGTATTCTACACTGGATAAAGGAATAATAACTGGTTCATCTGATGGACTTCTTCGTTTTTGGGAAAACGAGGATGGAGGTATTAGATGTGTGAAGAATGTCACCATTCATAGTGCTGCCATACTGTCCATCAGTGCTGGGGAACATTGGTTAGGAATTGGAGCGGCAGATAACTCTATGTCCCTATTTCATCGGCCACAAGAGAGACTCGGTGGCTTCTCTAACACGGGTGCAAAAATGGCTGGGTGGCAACTGTACAGAACCCCACAAAAGACTGCAGCCATGGTACGATGCGCATCTTCGGACCTCGAAAGGAAACGAATATGCACTGGTGGTCGTAATGGCCTTCTGAGGCTCTGGGAAGCAACTATCAACATCTGA 3840 44.35 MARIFEYFVVCGIGPEIRTLDGNKGFHGFSHLYLASLLDQYPPSNHSLYPPPPPQLATFRGVGFFYRLINRRLHLDRILQCVLPAGVEFFSSGFDSSDASTFPRSYPIVLTEGDGSKIYVSCIAFRDPVSEDIAEAYRLPPNSYADKCICIVSRSPSFHVLKDALEELFALCFSSSGSSKPLWDIIAFMISNVPLPTPGKERILFGIENCLLSVQAPPKDGLPHADISFQPLMQCLDLENLIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQTLTQAFYVVLKHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEDIPPIPEPELGSLRSELMKLLYPNVVSIDQMRSDLRSSCEQYPRGICKPWGEDHDLQLSQYAMYMTIICLNDGITQFLESQGFLDYLERCIGSDESNNNILDKLQDAIGRGQNPLSILPSSLAEPDIITISDPDMGSSGSGAKYTYDRFPSNVRTEEQEEKRQQILAAVRGAFEYSGKHNPNSPSMLMGRDPKAPSLSPMERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEIYKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMEQSSNKSANYTSLVSAQLIVMASHMAGLGLPDIDAWYMIETIAEKNSIGYKQLVSQMILSDSSLSAYALQNCSHPPMLASSAIKKSSKDGCSLESVKLRIGLAVALPYEFSHLQSYFNDFQIKLRGFLSHIQQLRISYWGLSAVKSQSTSAHATPSPHPKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARINLGRSGRWTADVPTESGTSQRQDLPSAGQKKVQSNIRVLRGHSGAVTALHCVSKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTGPVRAINSDRGKVVSGSDDHSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVICMEYDDSTGILAAGGRDTIANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIVTGSDDWTARLWSVSRGACDAVLACHAGPILAVEYSTLDKGIITGSSDGLLRFWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNTGAKMAGWQLYRTPQKTAAMVRCASSDLERKRICTGGRNGLLRLWEATINI 1279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 622024 636858 - Cp4.1LG20g01200.1 Cpe20g00113 486742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00113 1279 SMART DENN_cls 144 339 IPR001194 -
Cpe20g00113 1279 ProSiteProfiles Tripartite DENN domain profile. 19 468 IPR037516 -
Cpe20g00113 1279 ProSiteProfiles Trp-Asp (WD) repeats profile. 1103 1142 IPR001680 GO:0005515
Cpe20g00113 1279 Pfam WD domain, G-beta repeat 919 968 IPR001680 GO:0005515
Cpe20g00113 1279 Pfam WD domain, G-beta repeat 978 1010 IPR001680 GO:0005515
Cpe20g00113 1279 Pfam WD domain, G-beta repeat 1098 1133 IPR001680 GO:0005515
Cpe20g00113 1279 Pfam WD domain, G-beta repeat 1015 1051 IPR001680 GO:0005515
Cpe20g00113 1279 MobiDBLite consensus disorder prediction 842 865 - -
Cpe20g00113 1279 ProSitePatterns Trp-Asp (WD) repeats signature. 1038 1052 IPR019775 -
Cpe20g00113 1279 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1020 1054 - -
Cpe20g00113 1279 SMART uDENN_cls 1 126 IPR005113 -
Cpe20g00113 1279 ProSiteProfiles Trp-Asp (WD) repeats profile. 1065 1102 IPR001680 GO:0005515
Cpe20g00113 1279 MobiDBLite consensus disorder prediction 896 916 - -
Cpe20g00113 1279 ProSiteProfiles Trp-Asp (WD) repeats profile. 1143 1175 IPR001680 GO:0005515
Cpe20g00113 1279 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 980 1010 - -
Cpe20g00113 1279 SMART WD40_4 1054 1093 IPR001680 GO:0005515
Cpe20g00113 1279 SMART WD40_4 973 1010 IPR001680 GO:0005515
Cpe20g00113 1279 SMART WD40_4 917 968 IPR001680 GO:0005515
Cpe20g00113 1279 SMART WD40_4 1180 1217 IPR001680 GO:0005515
Cpe20g00113 1279 SMART WD40_4 1235 1274 IPR001680 GO:0005515
Cpe20g00113 1279 SMART WD40_4 1013 1051 IPR001680 GO:0005515
Cpe20g00113 1279 SMART WD40_4 1136 1175 IPR001680 GO:0005515
Cpe20g00113 1279 SMART WD40_4 1096 1133 IPR001680 GO:0005515
Cpe20g00113 1279 SUPERFAMILY WD40 repeat-like 921 1274 IPR036322 GO:0005515
Cpe20g00113 1279 Pfam DENN (AEX-3) domain 145 337 IPR001194 -
Cpe20g00113 1279 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1143 1175 - -
Cpe20g00113 1279 MobiDBLite consensus disorder prediction 889 916 - -
Cpe20g00113 1279 PRINTS G protein beta WD-40 repeat signature 997 1011 IPR020472 -
Cpe20g00113 1279 PRINTS G protein beta WD-40 repeat signature 1038 1052 IPR020472 -
Cpe20g00113 1279 PRINTS G protein beta WD-40 repeat signature 1120 1134 IPR020472 -
Cpe20g00113 1279 Gene3D - 908 1100 IPR015943 GO:0005515
Cpe20g00113 1279 Pfam uDENN domain 36 125 IPR005113 -
Cpe20g00113 1279 Gene3D - 224 382 IPR043153 -
Cpe20g00113 1279 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1279 - -
Cpe20g00113 1279 ProSiteProfiles Trp-Asp (WD) repeats profile. 1020 1060 IPR001680 GO:0005515
Cpe20g00113 1279 ProSitePatterns Trp-Asp (WD) repeats signature. 1080 1094 IPR019775 -
Cpe20g00113 1279 Gene3D - 1101 1279 IPR015943 GO:0005515
Cpe20g00113 1279 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1279 - -
Cpe20g00113 1279 ProSiteProfiles Trp-Asp (WD) repeats profile. 980 1019 IPR001680 GO:0005515
Cpe20g00113 1279 CDD WD40 920 1216 - -
Cpe20g00113 1279 Gene3D - 1 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00113 - - - csv:101212131 1909.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01166 Cpe-Chr12:9575888 Cpe20g00113 Cpe-Chr20:622024 3.27E-07 dispersed
Cpe17g00874 Cpe-Chr17:6781546 Cpe20g00113 Cpe-Chr20:622024 8.07E-06 dispersed
Cpe20g00113 Cpe-Chr20:622024 Cpe20g00414 Cpe-Chr20:2366880 4.32E-09 dispersed
Cpe04g00250 Cpe-Chr4:3116422 Cpe20g00113 Cpe-Chr20:622024 5.63E-12 transposed
Cpe20g00113 Cpe-Chr20:622024 Cpe03g00941 Cpe-Chr3:6926783 1.05E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00113 Cpe_Chr20 FPKM 3.164327 4.337328 3.208215 3.73937 4.201262 4.636044 4.527694 3.766303 3.066324 3.389793