Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00115 ATGATAAAAAACATGAAGGGAGAAGCAAAGCTAAAAAAGCCAAGAATAATGAACAACCAACGCACCACAATGCGGAATCAGTTTTTCTGGATGGTTTTGAGGATTCACATGGACTGTAATGGATGTTACAGGAAAGTAAGAAGAGCTCTTCTCAGTATAAAAGAGTTGGAGGACCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGAAAGTTTAGCCCTCAAGATATAGCAATCAAAATAAGGAAGAAGACCAACCGCAGAGTAGAGATATTGGAGATTCAGGAGTGTGATACCTTCACTGAAAACAATGATATCCAAGGACCCTTCATCATCAATGCCTGGAAATGCCAATCCAACTATGACCAAGCTGAAATTTGTTGTAAGCATGAAGGTAACAAAGAAGAAAAGGAAGAATTAGCTTCGTCTATAACATAA 444 38.51 MIKNMKGEAKLKKPRIMNNQRTTMRNQFFWMVLRIHMDCNGCYRKVRRALLSIKELEDHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFTENNDIQGPFIINAWKCQSNYDQAEICCKHEGNKEEKEELASSIT 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 641583 643103 - Cp4.1LG20g01180.1 Cpe20g00115 486744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00115 147 SUPERFAMILY HMA, heavy metal-associated domain 31 85 IPR036163 GO:0046872
Cpe20g00115 147 Gene3D - 25 91 - -
Cpe20g00115 147 PANTHER OS08G0431150 PROTEIN 11 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00115 - - - csv:101212620 226.483
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00115 Cpe-Chr20:641583 Cpe10g00238 Cpe-Chr10:1380650 7.32E-08 dispersed
Cpe20g00115 Cpe-Chr20:641583 Cpe13g00412 Cpe-Chr13:4457646 1.65E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g335 . . . . . . . . Cmo13g01070 . . . . . . Cpe20g00115 . . . . . . . . . . . . . . . . . . . Lsi02g00174 Csa01g00656 . . . . . . . . . . Sed01g1714 . . Cma13g01030 . Car13g00864 . . . Bhi08g01223 Tan05g2278 Cmetu12g1605 Lac10g0225 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003569 1 7 0 1 1 0 1 1 1 1 2 1 1 1 2 2 1 1 1 0 2 2 0 2 1 2 2 6 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00115 Cpe_Chr20 FPKM 3.125276 3.284909 5.062707 5.507099 5.630733 4.841388 5.05241 18.536205 17.41802 16.532804