Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00121 ATGAGCAGAGTGGGTGGCCCAAGTGGGCGAAAGAGGGGTTTGTTCAACGGCGAAGGGGCCATGGAGTTCTTCCGCCATTTAATGAGGGAGAAGCCTTTTCTTCCATTTCTGATACCTTTGGTTCTTATTGCTTGGAGTATTGAGAGATGGGTCTTCTCTCTCTCCAATTGGGTTCCTTTGGCTGTTGCTGTGTGGGCCACTTTACAGTATGGGAGTTATGAACGCCAAGTAATTGTTGATGATTTGAACACAAAATGGAGGCGACTTGTAACAAACACTTCGCCTGAAACACCTCTGGAACCCTGTGCATGGTTGAATAAGCTGTTGATGGAAGTATGGCCAAATTATTTTAATCCAAAACTTTCCTCAAAGTTTTCATCCGCAGTAAATAAACGGTTGAAGGACCGAAAGTCGAGGCTTATTGAAAACATGGAACTGCTGGAGTTTTCTCTAGGCTCGTGCCCTCCTAGCTTGGGTCTTGGTGGGGTTCGATGGTTAACTTGTGGTGGTGAGAGAATCATGCATTTGAATTTCGATTGGGACACAAATGAAATGAGCATTTTGTTGCAAGCCAAACTGGCCAAGCCACTTATGGGAACTGCACGGATTGTCATAAATAGTCTACATATAAAGGGTGATCTTGTGTTGATGCCTATTTTGGATGGGAAGGCAGTTTTATTTTCGTTTGTGACAACTCCTGATGTAAGAATAGGAATTGCTTTTGGAAGTGGTGGAAGCCAATCATTGCCTGCAACAGAGCTCCCTGGTGTTTCCTCCTGGCTGGTCAAAATTTTTACAGATACTATGGTTAGGACAATGGTTGAACCACGCAGGCGCTGTTTCTCTTTGCCCCCCGTTGATCTCAGGAAGAAGGCTGTTGGTGGTATCATATATGTGACTGTCATTTCTGCCAGAAAACTGTATCGAAGTAGCTTGAAAGGAAGTCCAACAAGAAGACAACAAAGCCACTCTTCTAATGGCTCATTCGGAGAGCATCTTAATGATAAAGATCTGCAGACATTTGTTGAGGTTGAACTTGAAAAGCTTAGTAGAAAAACAGATGCAAGATCAGGTTCAGACCCTCAGTGGAATGCCACATTCAATATGATCTTACACGAAGATACAGGAACTCTACGGTTTCATCTTTATGAGTATAATCCAAGCCATGTGAAGCATGATTATCTTGCAAGTTGTGAGGTTAAGCTGTCAGTGAGGCTTGTTTTAAAGGAATGGATGTACTCAGATGGTTCACATAGTTCGAACAGGTACCATGTTAGTCCACAACAATCTCTCTACGGGGCGTCGAGTTTTGTTTCGAGCACGGGAAGAAAGATCAACATCACAGTTGTGGAAGGAAAGGATCTTCCAACAAAAGACAAGAATGGAAAGTGTGATCCATATGTCAAATTGCAGTATGGAAAGTCTCTCCAGCGCACAAGAACTGCTCACTCCTTCAATCCATTATGGAATCAGAAGTTTGAATTTGATGAGATCGGTGGTGGTGAGTATCTAAAGTTGAAATGCCTTACTGAAGACATCTTTGGCAATGATAACACTGGGAGTGCAAGGGTTAATCTGGAAGGATTAGTAGAAGGGTCAGTTAGAGATGTATGGATTCCTCTTGAAAAGGTGAATTCTGGAGAATTAAGGCTTCAAATAGAAGCTATCAGAGTGGATGACAATGAAGGATCAAGGGGATCAAGCTTGGCTCCAACAAATGGTTGGATCGAACTCGTTCTAGTTGAAGCAAGAGACCTTGTTGCTGCTGATCTCAGAGGGACGAGTGATCCTTACGTGAGGGTCCAATATGGGAAGTTGAAGAAAAGAACCAAGGTTATGTACAAAACTCTAAGGCCCCAGTGGAATCAGATTCTGGAGTTTCCAGACAATGGCAGCGCTCTGCTGTTACATGTGAAAGACCACAATGCTCTGCTCCCAACGTCAAGCATAGGTGATTGTGTTGTGGAGTATCAAGGGCTGCCTCCAAACCAGATGTTTGACAAATGGATACCACTTCAGGGGGTTAAAAAGGGAGAGATACATATCCAAATCACCAAGAGAGTTCCAGAACTTGATAAGAGATCTAGTTTGGACTCAAAAACCAGTCTGGATTCTGAAATTTCCTTGAACAAAGCTCATCGGATTTCCAGTCAGATGAAACAAATGATGAACAAGTTACAAAGTTTCATTGAAGATAGCAATCTTGAAGGACTTGCGACGGGCATGAGTGAGCTGGAAAGTCTAGAGGATCTGCAAGAGGAGTATATGGCACAGCTTGAAACTGAACAGATGCTTCTAATAAACAAGATCAAGGAACTTGGTCAGGAGTTTCTCAACTCATCCCCTTCCTCAAGTAGAAGATCATTTGGATAA 2373 42.98 MSRVGGPSGRKRGLFNGEGAMEFFRHLMREKPFLPFLIPLVLIAWSIERWVFSLSNWVPLAVAVWATLQYGSYERQVIVDDLNTKWRRLVTNTSPETPLEPCAWLNKLLMEVWPNYFNPKLSSKFSSAVNKRLKDRKSRLIENMELLEFSLGSCPPSLGLGGVRWLTCGGERIMHLNFDWDTNEMSILLQAKLAKPLMGTARIVINSLHIKGDLVLMPILDGKAVLFSFVTTPDVRIGIAFGSGGSQSLPATELPGVSSWLVKIFTDTMVRTMVEPRRRCFSLPPVDLRKKAVGGIIYVTVISARKLYRSSLKGSPTRRQQSHSSNGSFGEHLNDKDLQTFVEVELEKLSRKTDARSGSDPQWNATFNMILHEDTGTLRFHLYEYNPSHVKHDYLASCEVKLSVRLVLKEWMYSDGSHSSNRYHVSPQQSLYGASSFVSSTGRKINITVVEGKDLPTKDKNGKCDPYVKLQYGKSLQRTRTAHSFNPLWNQKFEFDEIGGGEYLKLKCLTEDIFGNDNTGSARVNLEGLVEGSVRDVWIPLEKVNSGELRLQIEAIRVDDNEGSRGSSLAPTNGWIELVLVEARDLVAADLRGTSDPYVRVQYGKLKKRTKVMYKTLRPQWNQILEFPDNGSALLLHVKDHNALLPTSSIGDCVVEYQGLPPNQMFDKWIPLQGVKKGEIHIQITKRVPELDKRSSLDSKTSLDSEISLNKAHRISSQMKQMMNKLQSFIEDSNLEGLATGMSELESLEDLQEEYMAQLETEQMLLINKIKELGQEFLNSSPSSSRRSFG 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 671208 677283 - Cp4.1LG20g01160.1 Cpe20g00121 486750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00121 790 Pfam C2 domain 444 541 IPR000008 -
Cpe20g00121 790 Pfam C2 domain 576 672 IPR000008 -
Cpe20g00121 790 Pfam C2 domain 296 404 IPR000008 -
Cpe20g00121 790 CDD C2 445 541 - -
Cpe20g00121 790 ProSiteProfiles C2 domain profile. 275 418 IPR000008 -
Cpe20g00121 790 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 569 685 IPR035892 -
Cpe20g00121 790 Coils Coil 130 150 - -
Cpe20g00121 790 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 288 406 IPR035892 -
Cpe20g00121 790 ProSiteProfiles C2 domain profile. 426 539 IPR000008 -
Cpe20g00121 790 PANTHER OS01G0128800 PROTEIN 11 402 - -
Cpe20g00121 790 PANTHER OS01G0128800 PROTEIN 402 787 - -
Cpe20g00121 790 MobiDBLite consensus disorder prediction 313 333 - -
Cpe20g00121 790 ProSiteProfiles C2 domain profile. 557 670 IPR000008 -
Cpe20g00121 790 Coils Coil 742 776 - -
Cpe20g00121 790 CDD C2 576 672 - -
Cpe20g00121 790 Gene3D C2 domain 558 687 IPR035892 -
Cpe20g00121 790 Gene3D C2 domain 426 557 IPR035892 -
Cpe20g00121 790 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 95 284 IPR031468 GO:0008289
Cpe20g00121 790 Gene3D C2 domain 294 425 IPR035892 -
Cpe20g00121 790 SMART C2_3c 575 669 IPR000008 -
Cpe20g00121 790 SMART C2_3c 444 538 IPR000008 -
Cpe20g00121 790 SMART C2_3c 296 414 IPR000008 -
Cpe20g00121 790 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 443 555 IPR035892 -
Cpe20g00121 790 MobiDBLite consensus disorder prediction 312 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00121 - - - csv:101213500 1428.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01138 Cpe20g00121 CCT
Cpe09g01138 Cpe20g00121 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00121 Cpe-Chr20:671208 Cpe07g01121 Cpe-Chr7:9860286 7.85E-11 dispersed
Cpe18g00761 Cpe-Chr18:7295754 Cpe20g00121 Cpe-Chr20:671208 0 wgd
Cpe20g00121 Cpe-Chr20:671208 Cpe04g01403 Cpe-Chr4:11314103 1.48E-40 wgd
Cpe20g00121 Cpe-Chr20:671208 Cpe09g01138 Cpe-Chr9:9741524 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002821 1 3 2 1 1 1 4 1 2 1 1 2 3 2 2 3 2 1 2 1 2 2 2 2 2 1 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00121 Cpe_Chr20 FPKM 8.239035 8.141888 8.877417 8.893983 21.988344 24.005415 23.028887 12.861345 12.969007 12.923155