Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00122 ATGGCTGAGTTCACGGCAAACTTCCAGAGCTTAAAGCCTTCACCTTTTCCTCTAATGGACATGGATCCCAACCAAATTCCAAGTCTGAATTTTCTTGACAACATTCCTGTTCTGTTCAACGACAGTTTCTTTGGCAATCAAGTTGCTGTTCCTCCCAGATTCCCGGAAATTTGGGGAGAAAATTTCTGTCAAGCAAATCAGATCACTGCACCTGTTTTTGAGCCTACAAATCCATCTGGAAATGACCTCCATGGAAGCAAGAAAAGAAGGCTTCAAAATGAGGCATCTGAAAGCAGCTCTGGCAACTCAACCCCTCAGACTAAAAATAACTCTGGAAAAGGAAAGCGGTCGAAAAAGGGCGACGAAAACGACGGAGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACAGACAGTCACAGTATAGCAGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAATCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACTCAGATACTGCAGATAGATTGAAGGGAAAGGAAATGAGAGAAGGAAATGGAGGAGTATTGGTTGCATCAACTGAAGATGGTCCCTTTGCCATGAGCTTTGGTTCTTATTCCACAGCAATATGA 762 42.26 MAEFTANFQSLKPSPFPLMDMDPNQIPSLNFLDNIPVLFNDSFFGNQVAVPPRFPEIWGENFCQANQITAPVFEPTNPSGNDLHGSKKRRLQNEASESSSGNSTPQTKNNSGKGKRSKKGDENDGEKPREVVHVRAKRGQATDSHSIAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDTADRLKGKEMREGNGGVLVASTEDGPFAMSFGSYSTAI 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 682246 684350 - Cp4.1LG20g01150.1 Cpe20g00122 486751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00122 253 SMART finulus 146 196 IPR011598 GO:0046983
Cpe20g00122 253 Pfam Helix-loop-helix DNA-binding domain 144 191 IPR011598 GO:0046983
Cpe20g00122 253 PANTHER TRANSCRIPTION FACTOR BEE 1 2 227 - -
Cpe20g00122 253 MobiDBLite consensus disorder prediction 114 145 - -
Cpe20g00122 253 CDD bHLH_AtBPE_like 130 215 - -
Cpe20g00122 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 208 IPR036638 GO:0046983
Cpe20g00122 253 MobiDBLite consensus disorder prediction 71 145 - -
Cpe20g00122 253 Gene3D - 137 208 IPR036638 GO:0046983
Cpe20g00122 253 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 227 IPR024097 GO:0006355
Cpe20g00122 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 190 IPR011598 GO:0046983
Cpe20g00122 253 MobiDBLite consensus disorder prediction 95 111 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g01137 Cpe20g00122 CCT
Cpe18g00762 Cpe20g00122 CCT
Cpe18g00762 Cpe20g00122 ECH
Cpe09g01137 Cpe20g00122 ECH
Cpe04g01400 Cpe20g00122 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00706 Cpe-Chr3:4269812 Cpe20g00122 Cpe-Chr20:682246 2.34E-45 dispersed
Cpe13g00404 Cpe-Chr13:4415258 Cpe20g00122 Cpe-Chr20:682246 3.23E-33 dispersed
Cpe20g00122 Cpe-Chr20:682246 Cpe04g01526 Cpe-Chr4:12000006 6.57E-41 dispersed
Cpe18g00762 Cpe-Chr18:7310238 Cpe20g00122 Cpe-Chr20:682246 8.40E-69 wgd
Cpe20g00122 Cpe-Chr20:682246 Cpe04g01400 Cpe-Chr4:11301856 5.62E-63 wgd
Cpe20g00122 Cpe-Chr20:682246 Cpe09g01137 Cpe-Chr9:9735254 1.16E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51097 PF00010 HLH 2.50E-05 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00122 - - csv:101213736 392.504