Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00125 ATGCTTTCGATGGGCCTTTTGTCTTCTATTTGTGCCTGCTTGAAGAAGCTTAAAGCAGCTAATTCAGCGAGTGCCGATGAAGCGGATGATGAAGATGTATCCACTGACATCTTCTTTGAACTCAGTGCTTTGCAAATTGCGACTAATTTTTTTTCTGAGGTGAATAAGCTCGGCCATGGAGGTTTTGGACCGGTGTACAAGGGTTTCGGAGCAGCTCCATGTCAATTGGCAATAGTTAATTACCTGAACTTCGAATATCAAATTTGTCGCAATAAAAAGAGGTCTCCATTCCTGGATTGGACAACACGGTTCCATATAATTACAGGTATCGTGAGAGGTCTTCTCTATTTACATGAAGAGGCTCCTGCAAGAATTATACATAGAGATATCAAAGCCAGTAACGTATTATTAGATGAGAAGTTGAATCCGAAAATCTCTGATTTTGGATTAGCCCGGCTTTTTCCTGGGGATGATACACATTTGAATACATTTAAGATCGCTGGCACTTATGGATATATGGCTCCTGAATATGCAATTCATGGATACTTGTCTGTGAAGAGTGACGTTTTCAGTTTTGGAATCTTGGTATTGGAGATTGTTAGTGGAAGAAAAAATCATGATGATCGGCTTGGTGCTCAACAGGCGGACCTATTGGGATATGCATGGTCGCTTTACCAAGATGGGAAGATTTTAGAATTAGCTGATGAGAGCCTAACAAAGTGCAATGCAGATGAGGCAGCTATGTGCATTCAGTTGGGTTTGCTATGTTGTCAAGCGAGTGTTTCAGATAGGCCTGATATGAACACCATTCATCTCATGCTTTCCAGTGATTCATTCACGTTGCCGCGCCCCGGGAAACCTGGACTTCATGGTCGAGCAGCACCTCGGACAACTACCTCTACTTCTGCATTCACCAAGACAAATACTACTAGTACACAAACTGGCGTTACCAGAGCTTCTGCGAGTAGTAGTTTGGTAGAGGATTACTCAAGAAACTCCATGTCCATTTCTTCAATTGATGAAGGCAGGTGA 1032 42.44 MLSMGLLSSICACLKKLKAANSASADEADDEDVSTDIFFELSALQIATNFFSEVNKLGHGGFGPVYKGFGAAPCQLAIVNYLNFEYQICRNKKRSPFLDWTTRFHIITGIVRGLLYLHEEAPARIIHRDIKASNVLLDEKLNPKISDFGLARLFPGDDTHLNTFKIAGTYGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNHDDRLGAQQADLLGYAWSLYQDGKILELADESLTKCNADEAAMCIQLGLLCCQASVSDRPDMNTIHLMLSSDSFTLPRPGKPGLHGRAAPRTTTSTSAFTKTNTTSTQTGVTRASASSSLVEDYSRNSMSISSIDEGR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 694365 697193 - Cp4.1LG20g01340.1 Cpe20g00125 486754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00125 343 Gene3D Transferase(Phosphotransferase) domain 1 90 280 - -
Cpe20g00125 343 ProSiteProfiles Protein kinase domain profile. 1 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00125 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Cpe20g00125 343 MobiDBLite consensus disorder prediction 281 324 - -
Cpe20g00125 343 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 91 341 - -
Cpe20g00125 343 MobiDBLite consensus disorder prediction 294 324 - -
Cpe20g00125 343 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 91 341 - -
Cpe20g00125 343 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 77 - -
Cpe20g00125 343 Pfam Protein kinase domain 97 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00125 343 SUPERFAMILY Protein kinase-like (PK-like) 39 292 IPR011009 -
Cpe20g00125 343 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 77 - -
Cpe20g00125 343 SMART serkin_6 51 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00125 343 Gene3D Phosphorylase Kinase; domain 1 12 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00125 - - - csv:101214463 500.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00049 Cpe-Chr1:317100 Cpe20g00125 Cpe-Chr20:694365 1.59E-55 dispersed
Cpe20g00125 Cpe-Chr20:694365 Cpe09g00876 Cpe-Chr9:8023160 3.90E-24 dispersed
Cpe20g00125 Cpe-Chr20:694365 Cpe15g00772 Cpe-Chr15:7885245 7.36E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g307 . . . . . . . . . . . . . . . Cpe20g00125 . . . . . . . . . . . . . . . . . . . Lsi02g00185 Csa01g00668 . . . . . . . . . . . . . . . . . . . Bhi08g01238 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012066 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 0 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63065 PF00069 Pkinase 6.10E-26 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00125 Cpe_Chr20 FPKM 6.832644 6.974011 8.299032 9.284379 7.920634 8.880829 8.947229 11.55992 9.545877 10.725352