Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00129 ATGGCTAATGATCAGCTCAAGTATTCTCCATTACCCTCCAAGCTGCACCCCAATTCTCCATCTCACTTTTCTCAAATCTTCCGTTTTCTCTTCTTACTTATTGGCTTCTCCATTGGAATGGCCATTGGTTTGAACCTCAACAGCTTCTCCTCATTTAATATCTTTTCCCTTCCATCTTCACCATCAACCCTCTTGTTTCTCAAACCACAACAACCTCCCTCGTCGCCCCCTCCATCTCAACCACCGTCGCCATTGTTGCCGCCAGTACCATTGCCGTCTCCTGAGTTTTTCGACCCGAATGTAGAGCCACCTCTGATGCACAGAATGACAGATGATGAAGTCTTCTGGAGAGCATCCATGGTTCCACTGATCAAAGAATTCCCATATGAACGTGTGCCAAAAGTGGCTTTCATGTTTCTGATAAAGGGGTCGTTGCCTTTAGCTCCTTTGTGGGAAATGTTCTTCAAAGGCCATGAAAGGTTGTTTTCAATTTATGTGCACACCCATCCGTCCTACAATGTTTCTTCTTCTCTGCCTCCTGGCTCTGTCTTCCATGGAAGAAGAATCCCAAGCCAGCCGGTGCAATGGGGTAAACCCTCCATGATCGATGCCGAGCGCCGCCTTCTAGCCAACGCCCTTCTCGACTTCTCTAATGAAAGATTCATCCTTCTCTCCGAAACCTGCATTCCTCTCTACAACTTCACCACTGTCTACAACTACCTCCTCAATTCCAAGCACACCTTTGTTTCTTCCTATGACGATCCCCGAAAAATTGGCCGCGGTCGTTACAACCCTCAAATGTTTCCGACCGTGTCGATCGCCGACTGGCGAAAAGGATCGCAATGGTTTGAAGTAGATCGAACGGTGGCCGGCGAGATAATCTCCGACAAAACATTTTACCCTGTTTTCCGGAACCATTGCGGGCCGCCGTGTTACATGGACGAGCATTATATTCCTACGTTGGTTAATATTGTTTTGCCGGACCGGAACTCCAACAGAACCGTTACTTGGGTTGATTGGTCGAAAAACGGTCCGCATCCGGGCAGATTTGGGAGGCGGGAAATCTCGGTCGAGCTTTTGAGCAAGGTGCGGTTCGGTTTTAATTGTACTTACAATGGAAACGACACCGTTTCCCTATGCTTTCTGTTTGCTCGGAAATTCATGCCGGATTCCTTACAACCTCTGCTGAAGATTTGGCCATCTCTGTTGGAAGGTTTGGTTTAA 1224 47.71 MANDQLKYSPLPSKLHPNSPSHFSQIFRFLFLLIGFSIGMAIGLNLNSFSSFNIFSLPSSPSTLLFLKPQQPPSSPPPSQPPSPLLPPVPLPSPEFFDPNVEPPLMHRMTDDEVFWRASMVPLIKEFPYERVPKVAFMFLIKGSLPLAPLWEMFFKGHERLFSIYVHTHPSYNVSSSLPPGSVFHGRRIPSQPVQWGKPSMIDAERRLLANALLDFSNERFILLSETCIPLYNFTTVYNYLLNSKHTFVSSYDDPRKIGRGRYNPQMFPTVSIADWRKGSQWFEVDRTVAGEIISDKTFYPVFRNHCGPPCYMDEHYIPTLVNIVLPDRNSNRTVTWVDWSKNGPHPGRFGRREISVELLSKVRFGFNCTYNGNDTVSLCFLFARKFMPDSLQPLLKIWPSLLEGLV 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 710524 715819 + Cp4.1LG20g01280.1 Cpe20g00129 486758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00129 407 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 18 404 IPR044174 GO:0016757
Cpe20g00129 407 Pfam Core-2/I-Branching enzyme 135 363 IPR003406 GO:0016020|GO:0016757
Cpe20g00129 407 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 18 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00129 - - - csv:101207079 637.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00682 Cpe-Chr3:4135557 Cpe20g00129 Cpe-Chr20:710524 2.69E-144 dispersed
Cpe13g00397 Cpe-Chr13:4316033 Cpe20g00129 Cpe-Chr20:710524 5.08E-112 dispersed
Cpe17g00516 Cpe-Chr17:4315802 Cpe20g00129 Cpe-Chr20:710524 9.96E-117 dispersed
Cpe18g00223 Cpe-Chr18:3882831 Cpe20g00129 Cpe-Chr20:710524 1.17E-42 dispersed
Cpe20g00129 Cpe-Chr20:710524 Cpe11g00622 Cpe-Chr11:3945260 4.36E-70 dispersed
Cpe20g00129 Cpe-Chr20:710524 Cpe06g00231 Cpe-Chr6:1230648 2.51E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g296 . . . . . . . . . . Cma10g00306 . Car10g00291 . . Cpe20g00129 . . . . . . . . . . . . . . . . . Cone13ag0308 . Lsi02g00190 Csa01g00672 Chy12g01429 Cme12g01867 . . . . . . . . Sed08g2189 Cmo10g00327 . . . Car13g00850 . . . Bhi08g01242 Tan05g2258 Cmetu12g1703 Lac10g0246 Hepe07g2381 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00129 Cpe_Chr20 FPKM 0.0 0.0 0.0 0.0 0.440322 0.547049 0.410032 0.487417 0.522773 0.56992