Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00130 ATGTCGCCCAAGAGATTGTTCTGCCAAACAGAGCCGTGTTTAGAACAGCCTCTTGAGAAGAGGCGCCCGCGTCTGACGTTTGCGTCGATAATCGGGGACGTGGTTATGGTTAATTCCCAAAATCATTTGTTGAAAGCATTGGAGCCCTTGCTTAGACGAGTGGTGAATGAGGAAGTTGATCGGTGTTTATTGCGATATTCAAGGTTGTTACCTAGGGCATCTTCGTTGAGGATTCAGGCTCTCGAGCCTTCAAGTTTCTTATTGTATTTTGTGAATAATCTTCCTTCTACCATTTTTACTGGAAGTAAAATTACGGATGTTGAAAGTCAGCCACTCCGGATCGCCGTCGAGGCCGGCGCGGATAATCCGGCATTTCAGGTATATTCGGCCATGAAAATTGAAATTGTGGTACTGGATGGCGACTTTGCAAGCGGCGATAAACAGGATTGGACGGCGGAGGAATTCAATGCCAGCATTGTGAAGGAGAGGTCTGGAAAGAGGCCGCTGCTTCACGGCGAAATGAACATAACTCTCCGCGACCGCGCTGCAACCATCGGTGACATTGAATTCACCGATAACTCAAGTTGGATTCGGAGCCGGAAATTCCGGCTGGGTGCCCGAATTGTTGACGGGTCGGATTCTGATAAGAATCGCCCCCGGATCCGGGAAGCCATAACCGAACCGTTTGTTGTCAAGGATCACCGCGGAGAATGCGTAGGAATGTCAGAAAGGATGTGGAAAGCAACGGTGAAACATGCGCAGACTTGTGAATTGGGAAACAAGGTGTATATGTTCCGTGCACATAATGTCCTGCTGATCTTGAATCCTATTTGCGAAGTTGTAAGAGCCATGATCGATGACCAAATCTATTCATCTCGAGACCTTCCTAATATTCCCCAGGAGTATTTGATGAATTTGAGTAGACAAGCGTTCGATAACTGGCATTCGTTACAAGACTTTGAAGGCAATTTTAGAGAACCTCCCCTAATAACACAAGGAAATGAGGGGATTGGAAATGAAGAAGACAGCGATCATATAGTTAAAAAATCGTGGTTTCGAAGTTGCGAGTCCATGAGTGAAGAAGTTGAATTTAGAGATTGGAATTCCAATTTAGATCAGTTTATCTCTACAAGTTTTCCTTCTAATTATGGGTAG 1155 45.45 MSPKRLFCQTEPCLEQPLEKRRPRLTFASIIGDVVMVNSQNHLLKALEPLLRRVVNEEVDRCLLRYSRLLPRASSLRIQALEPSSFLLYFVNNLPSTIFTGSKITDVESQPLRIAVEAGADNPAFQVYSAMKIEIVVLDGDFASGDKQDWTAEEFNASIVKERSGKRPLLHGEMNITLRDRAATIGDIEFTDNSSWIRSRKFRLGARIVDGSDSDKNRPRIREAITEPFVVKDHRGECVGMSERMWKATVKHAQTCELGNKVYMFRAHNVLLILNPICEVVRAMIDDQIYSSRDLPNIPQEYLMNLSRQAFDNWHSLQDFEGNFREPPLITQGNEGIGNEEDSDHIVKKSWFRSCESMSEEVEFRDWNSNLDQFISTSFPSNYG 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 723081 725709 + Cp4.1LG20g01250.1 Cpe20g00130 486759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00130 384 Pfam Calmodulin binding protein-like N-terminal domain 88 234 IPR046831 -
Cpe20g00130 384 PANTHER PROTEIN SAR DEFICIENT 1 239 345 - -
Cpe20g00130 384 Pfam Calmodulin binding protein C-terminal domain 261 319 IPR046829 -
Cpe20g00130 384 PANTHER OS02G0177800 PROTEIN 2 238 IPR012416 GO:0005516
Cpe20g00130 384 PANTHER OS02G0177800 PROTEIN 239 345 IPR012416 GO:0005516
Cpe20g00130 384 PANTHER PROTEIN SAR DEFICIENT 1 2 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00130 - - - bhj:120084202 505.368
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe18g00828 Cpe20g00130 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00875 Cpe-Chr7:7883068 Cpe20g00130 Cpe-Chr20:723081 2.97E-36 dispersed
Cpe11g00887 Cpe-Chr11:7166185 Cpe20g00130 Cpe-Chr20:723081 5.71E-29 dispersed
Cpe18g00610 Cpe-Chr18:6407433 Cpe20g00130 Cpe-Chr20:723081 4.64E-60 dispersed
Cpe18g00828 Cpe-Chr18:7671185 Cpe20g00130 Cpe-Chr20:723081 2.36E-27 dispersed
Cpe20g00130 Cpe-Chr20:723081 Cpe09g01132 Cpe-Chr9:9704624 2.46E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g294 . . . . . . . . . . . . . . . Cpe20g00130 . . . . . . . . . . . . . . . Cone2ag0623 . . . Lsi02g00191 . Chy12g01428 Cme12g01866 . . . . . Bpe15g00529 . . . . . . . Car13g00849 . . Cpe18g00828 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002933 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 2 1 2 1 1 1 1 1 1 1 3 6 3 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00130 Cpe_Chr20 FPKM 0.0 0.0 0.0 0.0 0.405753 0.0 0.0 0.0 0.0 0.0