Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00132 ATGACTATCAAAACTCCTTCAACACCAGCTTCGAAAACAGAGAGGACACCAGCATCAACACCTGGAGGACCTCGATCTAAGGAAGAAAAGATCGTTGTTACTGTACGGTTAAGACCTCTGAGCAAAAAGGAGCAGCAAGCGAAGGATCAAATAGCATGGGAGTGCATTGACAACAATACGATTGTGTATAAACCCCAGCCTCAGGAACGTCATACTCAACCCGCCTCGTTTACATTTGATAAAGTTTTCGGTCCCGCTTCTTTGACCGAGGCAGTATATGAGGAAGGAGTAAAGAATGTTGCCTTATCTGCTCTAATGGGAATCAATGAACCAGGTCGGAATCTAAGGCTTCATGATGACTTAGAGAAAGGTACAATGGTTGAGAAATTAGTAGAGGAAACGGCGAGTAATGATCAACATTTGAGACATTTGATTGGCGTCTGTGAGGCTCAAAGACAAGTTGGTGAAACGGCCTTAAATGACTACAGCTCTCGGTCACACCAGATAATAAGGCTGACAATTCAAAGTACCCTACGAGAGAATTCAGATTGCGTTAGGTCTTTTGTGGCAAGCTTGAACTTTGTTGATCTAGCTGGAAGTGAGAGAGCTTCACAGACAAATGCTGATGGTGCTAGACTGAGAGAAGGCTGTCATATTAACCTTAGTTTGATGACGCTCACAACTGTGATCAGAAAGCTAAGAGACTCTAAGCTCACCCGCATATTGCAGCATTCACTTGGTGGAAATGCACGAACCGCCATTATATGCACATTGAGTCCAGCCCTGACTCATGTTGAACAATCGCGGAATACTTTGTACTTTGCCACCCGGGCAAAGGAAGTGACTAATAACGCCCAAGTTAATATGGTTGTATCGGACAAACAATTGGTCAAACATTTACAGAAGGAAGTTGCCAGGCTAGAAGCAGAACTGCGCACTCCTGATCCAAAAAAGGAGAAAGATTTTAAAATCCAGCAGATGGAAATGGAGATTGAAGAATTAAGGCGACAAAGAGACCTTGCTCAATCCCAGGTCGACGAGCTCCGCAGAAAACTTGAGGAGGACCAGCAGGTTTCAAACCCAATTGAATCTGCCCGTCCTCCAGTGAAGAAGTGCTTGTCCTTTACTGGGACATTGCCTCAGAAACTTGACGGCAAGGACCTTGGCCGTGGTATGATATTAAGGCAGTCTATCATGCGACAATCATCTACTGCTCCTTTCACACTTATGCATGAAATTCGCAAGCTGGAACATCTCCAGGAACAGCTTGGGGAGGAAGCTAATAGAGCCCTGGAAGTATTGCAAAAGGAGGTGGCTTGTCACAGACTGGGGAACCAAGATGCAGCAGAAACAATTGCCAAGTTGCAAGCTGAAATAAGAGGAATGAGGTCAGTCGGTTTAGAACCAAAAGAGGTTGAGGTTGGTAGCGTTATTGCTACTAACCAGAGTGTAGGTGCTAATCTAAAGGAAGAGATAACACGGCTTCATTCTCAAGGTAGCACCATTGCCAATTTAGAAGAGCAGCTTGAAAATGTTCAGAAGTCTATCGACAAGTTGGTAATGTCTCTACCAACCAATTATCAGCAGTTCATGAGTGAATCAACCCCCAAACAAAAAAGTTATACCAAAAAGAAGAAATTGCTTCCTTTGGCCTCGAGTAATGTTGCCAACCGGCAAAACTTTTTAAGATCGCCATGCTCACCTTCAACAACTTCCCAGCAAGTACTGGAGTTCGATTTTGAAAATAGACCTCCTGGGAATGATGATGTATTCTCACCTGAGACTCTGCACGAGTCTGAGAAAGGGACTCCAACAAAGAGTGAAGAAGGTGGAGATGTCTCGTCAAAGGAAAGCACTCCTTGTTATCGAAGATCAAGTTCTGTGAACATGAAGAAGATGCAAAAGATGTTCCAAAATGCTGCAGAAGAAAATGTAAGAAGCATAAGAGCATATGTAACAGAATTGAAAGAGCGTGTGGCTAAACTGCAGTACCAAAAACAGCTACTTGTTTGTCAGGTCCTTGAGCTGGAAGCAAATGAAGCTGCTGGCAACAAATTAGATTGTGATGAAAACTCATTTGAGCAGGATGAGGACCAAGTTCCGTGGCATGTAACTTTCAGGGAGCAAAGGCAGCAGATTATTGAGTTATGGGATGCTTGCTATGTCTCCATTATTCACAGATCTCAGTTCTACCTTTTATTCAAGGGCGACCAGGCTGATCAGATTTACCTGGAAGTAGAGATGAGGCGCTTAACATGGCTGCAGGAGCACCTAGCGGAATTTGGCAATGCTAGTGGAGCTCACGTTGGAGACGAGCCAACAATCTCTCGCTCGTCAAGGTTTCTTTTCTCTCCTTTCTTAACGTTTGATCAAATCAATTGGAATGATTACCGTAATTTTTCCATTCTCCATCTTGTTCTTCTATGTAGCATAAGGGCATTGAGACGTGAAAGAGAGTTTCTTGCAAAGAGATTAACTTCACGTTTGACAGCAGAAGAAAGAGATGCATTGTACATTAGATGGGAAGTACCTCTTGAGGGGAAACAGAGGAGAATCCAATTTGTAAACAAACTCTGGACATATCCTCACGACCCTAAGCATATTCAGGACAGTGCTGAGATAGTGGCAAAGCTTGTTGGGTTCCGCGAAGGTGGCAACATGTCCAGGGAGATGTTTGAACTCAATTTTGCTGTTCCTTCCGACAAAAGACCATGGATTATGGGATGGAACCCAATTTCAAACTTCCTTAATCTGTGA 2757 43.67 MTIKTPSTPASKTERTPASTPGGPRSKEEKIVVTVRLRPLSKKEQQAKDQIAWECIDNNTIVYKPQPQERHTQPASFTFDKVFGPASLTEAVYEEGVKNVALSALMGINEPGRNLRLHDDLEKGTMVEKLVEETASNDQHLRHLIGVCEAQRQVGETALNDYSSRSHQIIRLTIQSTLRENSDCVRSFVASLNFVDLAGSERASQTNADGARLREGCHINLSLMTLTTVIRKLRDSKLTRILQHSLGGNARTAIICTLSPALTHVEQSRNTLYFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPKKEKDFKIQQMEMEIEELRRQRDLAQSQVDELRRKLEEDQQVSNPIESARPPVKKCLSFTGTLPQKLDGKDLGRGMILRQSIMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIRGMRSVGLEPKEVEVGSVIATNQSVGANLKEEITRLHSQGSTIANLEEQLENVQKSIDKLVMSLPTNYQQFMSESTPKQKSYTKKKKLLPLASSNVANRQNFLRSPCSPSTTSQQVLEFDFENRPPGNDDVFSPETLHESEKGTPTKSEEGGDVSSKESTPCYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEAAGNKLDCDENSFEQDEDQVPWHVTFREQRQQIIELWDACYVSIIHRSQFYLLFKGDQADQIYLEVEMRRLTWLQEHLAEFGNASGAHVGDEPTISRSSRFLFSPFLTFDQINWNDYRNFSILHLVLLCSIRALRREREFLAKRLTSRLTAEERDALYIRWEVPLEGKQRRIQFVNKLWTYPHDPKHIQDSAEIVAKLVGFREGGNMSREMFELNFAVPSDKRPWIMGWNPISNFLNL 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 743439 748054 + Cp4.1LG20g01270.1 Cpe20g00132 486761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00132 918 Coils Coil 495 522 - -
Cpe20g00132 918 MobiDBLite consensus disorder prediction 1 30 - -
Cpe20g00132 918 ProSitePatterns Kinesin motor domain signature. 190 201 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cpe20g00132 918 Coils Coil 317 358 - -
Cpe20g00132 918 MobiDBLite consensus disorder prediction 1 20 - -
Cpe20g00132 918 ProSiteProfiles Kinesin motor domain profile. 1 281 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe20g00132 918 PANTHER KINESIN-LIKE PROTEIN KIN-7A 110 779 - -
Cpe20g00132 918 PANTHER KINESIN-LIKE PROTEIN KIN-7A 14 110 - -
Cpe20g00132 918 Gene3D Kinesin motor domain 10 109 IPR036961 -
Cpe20g00132 918 Pfam Kinesin motor domain 113 281 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe20g00132 918 Pfam Domain of unknown function (DUF3490) 706 777 IPR021881 -
Cpe20g00132 918 Pfam Domain of unknown function (DUF3490) 806 898 IPR021881 -
Cpe20g00132 918 Coils Coil 290 310 - -
Cpe20g00132 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 315 IPR027417 -
Cpe20g00132 918 Coils Coil 445 465 - -
Cpe20g00132 918 Gene3D Kinesin motor domain 110 312 IPR036961 -
Cpe20g00132 918 SMART kinesin_4 28 289 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe20g00132 918 PANTHER CENTROMERE PROTEIN E 110 779 - -
Cpe20g00132 918 PANTHER CENTROMERE PROTEIN E 807 917 - -
Cpe20g00132 918 PANTHER KINESIN-LIKE PROTEIN KIN-7A 807 917 - -
Cpe20g00132 918 PRINTS Kinesin heavy chain signature 191 209 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe20g00132 918 PRINTS Kinesin heavy chain signature 157 174 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe20g00132 918 PRINTS Kinesin heavy chain signature 231 252 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe20g00132 918 Coils Coil 416 436 - -
Cpe20g00132 918 MobiDBLite consensus disorder prediction 579 625 - -
Cpe20g00132 918 MobiDBLite consensus disorder prediction 593 613 - -
Cpe20g00132 918 PANTHER CENTROMERE PROTEIN E 14 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00132 K11498 CENPE; centromeric protein E - csv:101215425 1515.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01132 Cpe20g00132 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01703 Cpe-Chr1:11287006 Cpe20g00132 Cpe-Chr20:743439 0 dispersed
Cpe15g00563 Cpe-Chr15:6454530 Cpe20g00132 Cpe-Chr20:743439 1.16E-35 dispersed
Cpe20g00132 Cpe-Chr20:743439 Cpe10g01136 Cpe-Chr10:8021306 4.80E-46 dispersed
Cpe20g00132 Cpe-Chr20:743439 Cpe09g01132 Cpe-Chr9:9704624 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g285 Blo04g00833 Blo16g00131 . . . Bpe13g00360 Bma06g00050 . Cmo13g01049 Cmo18g00040 . . . . . Cpe20g00132 . . . . . . . . . . . . . . . . . . . Lsi02g00207 Csa01g00689 Chy12g01421 Cme12g01857 . . Bda11g01773 . . Bpe15g00531 Bma03g00900 . . . . Cma13g01010 Cma18g00049 Car13g00845 Car18g00043 Cpe09g01132 . Bhi08g01257 . . . . . . Cla04g01075 Cam04g1119 Cec01g1632 Cco01g1678 Clacu04g1145 Cmu04g1126 Cre01g1427 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001397 1 1 3 3 2 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 2 2 3 4 2 1 10 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00132 Cpe_Chr20 FPKM 0.545946 0.270399 0.0 0.0 0.326988 0.203832 0.310786 0.55804 0.759467 1.013892