Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00138 ATGATCTTTGGGTTCCATGTCAATGGATTTTCCCGTCCCGGGAAAAGTATGGGGAGCCCTGCATTAAGTGGCCGGAATAACGGGCAGCGATTAGGCATTACTGATCCTATTTCGTTGAGTGGGCCGACGGAGTATGATGTGATAAAGACTCGCGAACTCGAAAAGGTTCTGGATGCTGGATTGTACGAAAGTCAGGAGGAAGCCGTGAGTAGAGAGGAAGTTCTTGGGAGACTAGACCAGATTGTGAAGATTTGGGTTAAAACAATTAGTCGTGCAAAGGGGTTGAATGAGCAACTGGTACAAGAAGCCAATGCTAAGATTTTCACGTTCGGTTCATATCGCTTAGGGGTGCATGGCCCTGGAGCAGATATTGATACGCTGTGTGTGGGACCTAGACATGCAACACGTGAAGAAGACTTTTTCGGTGAGCTACATAAAATACTGTCAGAGATGCCAGAAGTATCTGAGTTGCACCCTGTGCCTGATGCTCATGTCCCTGTGATGAAATTTAAGTTTTCCGGGATTTCTATTGATCTTCTCTATGCGAAATTGTCACTTTGGGTTATTCCTGAAGACTTGGATATATCTCAGGACTCGATACTACAGAATGCAGATGAACAGACAGTTCGTAGTTTAAATGGTTGTCGAGTTACTGATCGAGTTCTGCGATTAGTTCCAAATATTCAGAGTTTTCGAACAACATTGAGATGCATGAGGTTTTGGGCAAAACGCCGAGGTGTTTATTCCAATGTTTCTGGGTTTCTTGGCGGAATAAACTGGGCGTTGCTTGTTGCTCGCATATGCCAACTATATCCCAATGCATTGCCAAATATGCTCGTGTCTCGGTTTTTCAGGGTCTTCACCCAGTGGCGCTGGCCAAATCCAGTCATGCTCTGTGCTAATGAAGAAGGATCTCTTGGACTTCCAGTTTGGGATCCAAGGAGAAATCCGAAGGATAGATTCCATTTAATGCCTATCATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTTTCATCAAGCACTCTGCGTATTATGACTGAAGAATTTCAGAGGGGACATGATATTTGTGAGGTTATGGAAGAAAATAAGGCCGATTGGGATACACTTTTCGAGCCCTACCCCTTCTTCGAGGCGTACAAAAACTATTTACAAACCGACATTACTGCAGAAAATGATGATGATCTAAGAAACTGGAAAGGTTGGGTTGAATCTCGTCTTCGCCAACTGACATTGAAGATTGAGAGACATACGTATAACATGCTTCAGTGCCATCCACATCCAGGAGATTTTTCAGACAAATCCAGACCTTTCCACCATTGTTATTTCATGGGTTTGCAGCGAAAACAAGGAGTTCCTGCAAGTGAGGGCGAACAGTTCGATATGAGGTTGACAGTCGATGAATTTAAACGTTCTGTCAACATGTATACAATGCGAAAGCGTGGGATGGAGATTTATGTAACACATGTGAAAAGGAGGAATATACCAAATTTCGTTTTTCCGGGTGGAGTCCGACCTTCGCGTGCATCAAAAATGACTTGGGATAGTAGGCGTAGTTTGGAACTAAAAGCTTCTGATAGCACTCAAGTAGACAGGCCATTTGAAGCTACAGAAAGTTTAGATGGAGTAGATGATAGAAGGAAAAGAAGGCGTATTGATTATAATGCAAATACTAACTTGAGAAATGGAGAGTCCTTGGCTGCTGCTCATTCCCAGCCTGTGGAAGTTCACGAAGTCAGCCAAATCAGCACCACTAGCTCATGTTCCATAAAGGATGTGAATTCTATTCCCACTAGTGCAAATAACATAGAAAATCTGGCAGATGTTTCCTCTCAGAATAATGGAGACCAAGCTGCGGCTACTGATACACCAAGCTGTAAAGAAGCAGAGAAGCTGGCAATTCAAAAGATTCTGTCTGGCTCATACGACTCTCACCAAGAGTTTCCTTGTGAGCCTGAAGAGCTCGATGATATTGATTATACAAAACAAGCTATAGATTTTGGGGCCACGCGGCAAGGTATCCCCATGACGTCTTCGGTTGCAAAGACATCTTCCGTAGTAGTTCCTATGACATCTTGCAATGAAGCACGCCTGACCTCAAGATCATATTCCAATGGGGGCTTAGAGGAGCTTGAGCCTGCTGAAGTAGTGGCGCTATCGTCAACTGGGACCACTCGTGCACCCGTGGCTGAGCGAAAGCCAATCATCAGGTTGAGCTTCACTTCCTTGGGCAAGGCAGATGGAGCACTTAGGTGTGGTGCACGTTGCGCGACTTGCATCACTGGTATGGAAATGAAACATCTTGAATATGTGATGGTTCCGCTTGGTTTTACGGTGCTGGTGGGATACCATCTTTGGCTGATAATCACCATTTACCGGAGTCCTAAAAGAACTGTCATTGGAATCAACGCTGAATCCCGCCGGCAATGGGTCGCCACCATTGTTTCAGACCCCGAGAAGAATGCTGTTCTTGGAGTCCAAACCATACGAAACAACATCATGGCTTCGACGCTTATGGCTACGACGACGATCACCGTCGGCTCATTGATCAGTGTTTTTGTGGGCAGCACATCAAGTACTGGAAAGTACCGTTACATTTTGCTGTGTTTCCTCGTTGCATTTCTTTGCAATGTGCAATCTATTAGATACTATGCTCATGCTAGCTTCTTAGTCACATTGCCTGCTGGTGAAGGCAGAAAGGACTATCTTGCTGCAATCTTGAATCGAGGAAGCTTATTTTGGTCGATCGGATTGCGAGCTTTCTATTTCGCAATTCCTTTCTTCCTCTGGATCTTTGGACCTCTATCAATGTTTTTCAGTTGCTACCTGATAGTATTTGTTCTTTACTTCTTGGACTTTACAAGAACTTCCAGCTATGATCCTTATGGATATGTGCAAAAGGAAGAAGTGAACAACAAAGACATTGAATCTGTCGGTCAGTCAGGTACCCAGAAGAACACAAGAAAGGCAGGCATTGAACCTTGA 2991 44.3 MIFGFHVNGFSRPGKSMGSPALSGRNNGQRLGITDPISLSGPTEYDVIKTRELEKVLDAGLYESQEEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHKILSEMPEVSELHPVPDAHVPVMKFKFSGISIDLLYAKLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDRVLRLVPNIQSFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLYPNALPNMLVSRFFRVFTQWRWPNPVMLCANEEGSLGLPVWDPRRNPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGHDICEVMEENKADWDTLFEPYPFFEAYKNYLQTDITAENDDDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSRPFHHCYFMGLQRKQGVPASEGEQFDMRLTVDEFKRSVNMYTMRKRGMEIYVTHVKRRNIPNFVFPGGVRPSRASKMTWDSRRSLELKASDSTQVDRPFEATESLDGVDDRRKRRRIDYNANTNLRNGESLAAAHSQPVEVHEVSQISTTSSCSIKDVNSIPTSANNIENLADVSSQNNGDQAAATDTPSCKEAEKLAIQKILSGSYDSHQEFPCEPEELDDIDYTKQAIDFGATRQGIPMTSSVAKTSSVVVPMTSCNEARLTSRSYSNGGLEELEPAEVVALSSTGTTRAPVAERKPIIRLSFTSLGKADGALRCGARCATCITGMEMKHLEYVMVPLGFTVLVGYHLWLIITIYRSPKRTVIGINAESRRQWVATIVSDPEKNAVLGVQTIRNNIMASTLMATTTITVGSLISVFVGSTSSTGKYRYILLCFLVAFLCNVQSIRYYAHASFLVTLPAGEGRKDYLAAILNRGSLFWSIGLRAFYFAIPFFLWIFGPLSMFFSCYLIVFVLYFLDFTRTSSYDPYGYVQKEEVNNKDIESVGQSGTQKNTRKAGIEP 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 764870 773828 - Cp4.1LG20g01360.1 Cpe20g00138 486767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00138 996 SUPERFAMILY Nucleotidyltransferase 31 223 IPR043519 -
Cpe20g00138 996 Pfam Nucleotidyltransferase domain 96 181 IPR002934 GO:0016779
Cpe20g00138 996 Gene3D Poly(A) polymerase predicted RNA binding domain 377 492 - -
Cpe20g00138 996 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 376 502 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cpe20g00138 996 Pfam Poly(A) polymerase predicted RNA binding domain 438 509 IPR007010 GO:0003723|GO:0043631
Cpe20g00138 996 Pfam Poly(A) polymerase predicted RNA binding domain 378 437 IPR007010 GO:0003723|GO:0043631
Cpe20g00138 996 Gene3D - 32 373 - -
Cpe20g00138 996 Pfam Poly(A) polymerase central domain 32 375 IPR007012 GO:0004652|GO:0043631
Cpe20g00138 996 Gene3D Beta Polymerase, domain 2 63 219 IPR043519 -
Cpe20g00138 996 CDD NT_PAP_TUTase 71 225 - -
Cpe20g00138 996 Pfam Protein of unknown function, DUF599 773 957 IPR006747 -
Cpe20g00138 996 SUPERFAMILY PAP/OAS1 substrate-binding domain 226 375 - -
Cpe20g00138 996 PANTHER POLY A POLYMERASE 17 681 - -
Cpe20g00138 996 MobiDBLite consensus disorder prediction 977 996 - -
Cpe20g00138 996 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 17 681 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00138 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] - csv:101217340 1300.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01126 Cpe20g00138 CCT
Cpe09g01126 Cpe20g00138 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00645 Cpe-Chr12:6314692 Cpe20g00138 Cpe-Chr20:764870 0 dispersed
Cpe14g00003 Cpe-Chr14:22840 Cpe20g00138 Cpe-Chr20:764870 2.65E-60 dispersed
Cpe17g00526 Cpe-Chr17:4380587 Cpe20g00138 Cpe-Chr20:764870 0 dispersed
Cpe18g00691 Cpe-Chr18:6891090 Cpe20g00138 Cpe-Chr20:764870 3.33E-55 wgd
Cpe20g00138 Cpe-Chr20:764870 Cpe09g01126 Cpe-Chr9:9672902 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g270 Blo04g00834 . . . . . . . Cmo13g01043 . . . . . . Cpe20g00138 . . . . . . . . . . . . . . . . . . . Lsi02g00215 Csa01g00698 Chy12g01415 Cme12g01849 . . . . . Bpe15g00533 Bma03g00902 . . . . Cma13g01005 . Car13g00840 Car18g00050 Cpe09g01126 . Bhi08g01267 Tan05g2221 . Lac10g0269 Hepe07g2369 . . Cla04g01067 Cam04g1110 Cec01g1624 Cco01g1671 Clacu04g1136 Cmu04g1119 Cre01g1420 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003713 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 4 4 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00138 Cpe_Chr20 FPKM 1.113548 1.028592 0.872544 0.706209 0.0 0.0 0.0 4.162224 4.360645 5.228874