Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00145 ATGAAGAACCTCCTCAAGAAGTTCCACATCATGTCCAGTGGTCAGTCAGACGACGCATCCGAAGGGTCTACTTCATCGAGGGGCAGTAAATTAATTGAGGCTTCATCGTCTGATAAGCTGCTATCTCGCTCCCGGCCGACCCATTTTAGCTCTGAGCATAAACCCTTATCGGGGTTATCCGGTTGGCTGAACTCTGTTACAAATAGGCGTAGCCCCAGCCCTCCATCATCTTCGAATCCCACTGCAGGGGAGATAATGGAGCCATCGGATTCAGTATCTAGCAGAGATGCTGCATTGGATACATCTAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAAATGAGTGCTAGAGAGGATCCTGAGGCGGCTCAGATTGAGGCTGTGAAGCAGATCAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGCGTCTTCACCGAGTCCACCTCAGAGAAAATGCCTTCCTTAGTTGATTTGCAAGGAGCACCAATGTCTGGCAGTGTCACTTGGGAAGCAGTTCTGATCAACAAAGCTGCTGATGCTAACTTATTGAAACTTGAACAGACAGCATTGGAGATGGCCATCAAGATGGGGTCAGAATCTCCAATTTCTGTAAATAGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTGGGGGATCCTGAAAAGATGTTGATAAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCAGATGGCGTGGGCATTCCTTGTCGGTTGGTAAAAGGACCACAGTACACGGGTTCTGATGATGTGGCAATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTCGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCCTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCATTAGAGGAAAATCCATATTTTGGGATATCGGATAGGAAACCAAAGTCCGGGACTCTCAGTGCCACAAAGGAATATGATCCTCCCAATGTCAACAAGGGGCCGTCACGTGATTTTGCTAGCAAACCAAATTATCCTGGCATGCACATTCGATCACCTTCATGGACCGAGGGTGTTAGCTCACCTGCCGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGGTTGGCTCAGAAGCTTCATGATGTGTTGCTTGAAAGTGGTGTAGTTGCTCCCCCTAACTTGTTTACCGAGGCATACCCCGACCAAATAGATGTTATCGTTGAGTCTAAGTCACCAACGGAAGACAAGGATCAAAGTAGGAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAAAGATCCTCGAAACGAAAGCACAAAATCCGATATTACCCTTGATGATGTTGCAGAATGTGAAATCCCATGGGAAGAAATTTCCTTGGGCGAGCGTATTGGACTTGGATCATATGGGGAGGTCTACCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGATTTCTAGACCAGGATATTTCTGGCGAAACTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTGACTCGTGCTCCCCATCTTTCAATTGTTACCGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTGCTTCACCGTCCCAACAATCAATTAGACGAACGAAAGCGAATGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACGCCTGTCGTTGTACACCGTGATTTGAAGTCCCCAAATCTACTTGTCGATAAAAATTGGGTCGTTAAGGTGTGTGATTTTGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACAGCGGGAACCGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAAAAGTGCGATGTCTATAGTTACGGAGTCATACTTTGGGAGCTGTCTACGATGCAACAACCGTGGGGAGGAATGAACCCAATGCAAGTTGTTGGCGCCGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATATGGATCCTGCCATCGCCGACATTATTAGGAAATGCTGGCAAACAGATCCAAGGTTAAGACCTTCATTTGCGGAGATTATGGCTGCGTTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTGCCGAGACCAAGTGGTCGTGATAAGGCTCGATTGTTGCAAGTTGCGGAAGACCCGTCAGGCTAG 2559 46.27 MKNLLKKFHIMSSGQSDDASEGSTSSRGSKLIEASSSDKLLSRSRPTHFSSEHKPLSGLSGWLNSVTNRRSPSPPSSSNPTAGEIMEPSDSVSSRDAALDTSRHDSGSSNSRDPDIEEEYQIQLALEMSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTESTSEKMPSLVDLQGAPMSGSVTWEAVLINKAADANLLKLEQTALEMAIKMGSESPISVNSYLVRKLAVLVSDHMGGPVGDPEKMLIKWRNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEENPYFGISDRKPKSGTLSATKEYDPPNVNKGPSRDFASKPNYPGMHIRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKKDPRNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGETLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLLHRPNNQLDERKRMRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNMDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMSSSQVPRPSGRDKARLLQVAEDPSG 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 821271 831537 + Cp4.1LG20g01420.1 Cpe20g00145 486774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00145 852 Gene3D Transferase(Phosphotransferase) domain 1 647 832 - -
Cpe20g00145 852 Pfam Protein tyrosine and serine/threonine kinase 569 820 IPR001245 GO:0004672|GO:0006468
Cpe20g00145 852 ProSiteProfiles Protein kinase domain profile. 568 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00145 852 MobiDBLite consensus disorder prediction 9 44 - -
Cpe20g00145 852 CDD STKc_MAP3K-like 574 820 - -
Cpe20g00145 852 MobiDBLite consensus disorder prediction 51 88 - -
Cpe20g00145 852 ProSitePatterns Protein kinases ATP-binding region signature. 574 595 IPR017441 GO:0005524
Cpe20g00145 852 MobiDBLite consensus disorder prediction 97 116 - -
Cpe20g00145 852 MobiDBLite consensus disorder prediction 824 852 - -
Cpe20g00145 852 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Cpe20g00145 852 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 515 - -
Cpe20g00145 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Cpe20g00145 852 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 515 - -
Cpe20g00145 852 MobiDBLite consensus disorder prediction 1 116 - -
Cpe20g00145 852 MobiDBLite consensus disorder prediction 520 552 - -
Cpe20g00145 852 SMART serkin_6 568 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00145 852 Gene3D Phosphorylase Kinase; domain 1 561 645 - -
Cpe20g00145 852 MobiDBLite consensus disorder prediction 378 456 - -
Cpe20g00145 852 MobiDBLite consensus disorder prediction 380 401 - -
Cpe20g00145 852 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 545 850 - -
Cpe20g00145 852 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 545 850 - -
Cpe20g00145 852 SUPERFAMILY Protein kinase-like (PK-like) 550 819 IPR011009 -
Cpe20g00145 852 PRINTS Tyrosine kinase catalytic domain signature 728 738 IPR001245 GO:0004672|GO:0006468
Cpe20g00145 852 PRINTS Tyrosine kinase catalytic domain signature 681 699 IPR001245 GO:0004672|GO:0006468
Cpe20g00145 852 PRINTS Tyrosine kinase catalytic domain signature 747 769 IPR001245 GO:0004672|GO:0006468
Cpe20g00145 852 PRINTS Tyrosine kinase catalytic domain signature 642 655 IPR001245 GO:0004672|GO:0006468
Cpe20g00145 852 PRINTS Tyrosine kinase catalytic domain signature 791 813 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00257 Cpe-Chr2:1330695 Cpe20g00145 Cpe-Chr20:821271 1.82E-82 dispersed
Cpe06g00238 Cpe-Chr6:1261090 Cpe20g00145 Cpe-Chr20:821271 4.34E-72 dispersed
Cpe08g01046 Cpe-Chr8:7996171 Cpe20g00145 Cpe-Chr20:821271 7.47E-39 dispersed
Cpe10g00265 Cpe-Chr10:1584095 Cpe20g00145 Cpe-Chr20:821271 7.21E-39 dispersed
Cpe12g00324 Cpe-Chr12:2140956 Cpe20g00145 Cpe-Chr20:821271 5.06E-77 dispersed
Cpe18g00079 Cpe-Chr18:2046181 Cpe20g00145 Cpe-Chr20:821271 1.81E-60 dispersed
Cpe18g00543 Cpe-Chr18:6006405 Cpe20g00145 Cpe-Chr20:821271 7.86E-49 dispersed
Cpe20g00145 Cpe-Chr20:821271 Cpe06g00457 Cpe-Chr6:2662617 1.84E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63068 PF07714 PK_Tyr_Ser-Thr 9.70E-68 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00145 - - lsv:111885432 1008.05