Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00146 ATGGCTTCCTTTTTCGGATCAAATACATTTCTATCCCACCCACTTACCAGAACTTATCACTTGGCTTCCTCACAAACACCTTCACCTTCAACCCCACCTTCCCAACCGCCGCAAACTCCGTCGCCATCTCCATCTCTGAGCACTACTTCATCGGAGCCACCAAAACCAGCCCCAACAAGGGTGGAGCAACAGAGACCAACCACCAATGTCGAGTCCACGGATTGGATTGCTTCAACCTTGACAAGGCGATTCGGGCTCGGCGCAGGCCTTGGGTGGGCTGCTTTTCTCGCCTTTGGTGTAATCTCCGAACAGATCAAAACCCGCCTCGAAGTCTCTCAAGAAGTAGCAAATACAAGAAACGTTGAAAAGGAAGAGGAAGTAGAGCTACCCAATGGCATAAGGTATTACGAGCTGAGAGTTGGCGGCGGCGCCACACCGAGGTCCGGGGACTTGGTTGTGATAAACCTCAAGGGAAAGATACAAGGCAGTGATGAAGTATTTGTAGATACCTTTGAAAGTGGTAGAAAGCCACTGGCTTTGGTGATGGGCTCAAGACCTTACAGCAGAGGAATGTGTGAAGGTTTGGAATATGTGGTGAAATCCATGAAAGCAGGTGGTAAGAGGAGAGTTATAATTCCTTCTAATTTGGGGTTTGGAGAGAAAGGTGGAGATTTGGGTTCTGGTCTTCAAATTCCTCCATTTGCAACTTTAGAGTACGTTGTTGAGCTTGACAAGGTGTCCATTGCTCCTGCTTGA 756 48.41 MASFFGSNTFLSHPLTRTYHLASSQTPSPSTPPSQPPQTPSPSPSLSTTSSEPPKPAPTRVEQQRPTTNVESTDWIASTLTRRFGLGAGLGWAAFLAFGVISEQIKTRLEVSQEVANTRNVEKEEEVELPNGIRYYELRVGGGATPRSGDLVVINLKGKIQGSDEVFVDTFESGRKPLALVMGSRPYSRGMCEGLEYVVKSMKAGGKRRVIIPSNLGFGEKGGDLGSGLQIPPFATLEYVVELDKVSIAPA 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 832131 833346 + Cp4.1LG20g01390.1 Cpe20g00146 486775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00146 251 MobiDBLite consensus disorder prediction 52 73 - -
Cpe20g00146 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP17-2, CHLOROPLASTIC 1 251 - -
Cpe20g00146 251 SUPERFAMILY FKBP-like 75 246 - -
Cpe20g00146 251 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 145 243 IPR001179 GO:0003755
Cpe20g00146 251 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 149 247 IPR001179 GO:0003755
Cpe20g00146 251 Gene3D - 101 249 IPR046357 GO:0003755
Cpe20g00146 251 MobiDBLite consensus disorder prediction 29 51 - -
Cpe20g00146 251 MobiDBLite consensus disorder prediction 16 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00146 - - - cmos:111431343 424.476
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01118 Cpe20g00146 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00146 Cpe-Chr20:832131 Cpe20g00608 Cpe-Chr20:3746886 3.00E-10 dispersed
Cpe02g00023 Cpe-Chr2:124972 Cpe20g00146 Cpe-Chr20:832131 5.39E-06 transposed
Cpe08g01061 Cpe-Chr8:8086383 Cpe20g00146 Cpe-Chr20:832131 9.04E-17 transposed
Cpe20g00146 Cpe-Chr20:832131 Cpe09g01118 Cpe-Chr9:9616810 5.42E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g220 . . . . . . . . . Cmo18g00051 . . . . . Cpe20g00146 . . . . . . . . . . . . . . . . . . . . Csa01g00708 Chy12g01403 Cme12g01836 . . . . . . . . Sed01g1762 . . . Cma18g00068 Car13g00830 Car18g00059 Cpe09g01118 . Bhi08g01285 Tan05g2199 Cmetu12g1628 Lac10g0284 Hepe07g2359 . . Cla04g01053 Cam04g1096 Cec01g1611 Cco01g1657 Clacu04g1122 Cmu04g1106 Cre01g1405 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013704 1 1 0 0 1 1 2 0 1 1 1 0 1 1 1 1 0 1 2 1 1 1 1 1 0 0 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00146 Cpe_Chr20 FPKM 9.929611 12.289953 2.581273 2.596787 0.838281 0.393777 0.554104 0.115548 0.0 0.051585