Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe20g00149 | ATGTGGATGATGGGTTACAATGACGCCGGAGATTTGAGCGATTCCTTCACTCCTCGCCGCCTTAGGCCTCTCCTTCCTCGCCCTCTCTCTTCTCTTTCCTCCACCGCCCCCGTTAATCCTCCTTTCAACCTTATCCACACCAACGATTTCTTCTCCCAATTTCACCACATGGCCACCGTGACTGATCAGACCAAGAGAGAGTTGAACAACGCGCCACCGCCCGTCGTGGTTAGCTCGCGGTGGAACCCTACGCCGGAGCAGTTGAGAGTGTTGGAAGAATTGTATCGGCGGGGGACTCGAACTCCCTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGAGAACGCCAGAAACGACGTCGTCAGATGGAATCCGCCATCACCGCCGACCACTCCACTCGCGAAGCCGGAATCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGCACCCTCTTCCAACTGCACTACACTTCCGGAGGAATCTGCTACCATTCAACCACCGCCAACCCCTTGCACCACACAACATGGATGGGTCCAATTCCAAGACTTCCTTCGAAACAACAACAACAACACCAACAACAACAACGCACCCTCCTCCTCCTCCTTGCACTTCATGCATTCTCCCCCCACCACCGCTCTCGACGGCGGAGGAGCCCAGCTCATGATGAACACAGCCCTCATCCCCACCACCACCGCCGCCGCCTCCACAGTTACAACAATAATGCACTCAAAATCTCATTCTAATATTGGAGGCTTTGCACCAAATGGGGTGGAGGAATTGGAGGAATCAGAAGAAGCTGAAACCCTTCAACTTTTTCCTTTGTGCAGTGAGTCACGGAATGGTGAGATTAGTGAAGGGAAAAATGGGTTTGAAACGGTGGGAAGTTCAGCTAATATGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAACTGA | 1032 | 50.87 | MWMMGYNDAGDLSDSFTPRRLRPLLPRPLSSLSSTAPVNPPFNLIHTNDFFSQFHHMATVTDQTKRELNNAPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSTREAGILERKDSGSGRTVYEEQTKNWAPSSNCTTLPEESATIQPPPTPCTTQHGWVQFQDFLRNNNNNTNNNNAPSSSSLHFMHSPPTTALDGGGAQLMMNTALIPTTTAAASTVTTIMHSKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSESRNGEISEGKNGFETVGSSANMTPLQFFEFLPLKN | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 844047 | 848044 | - | Cp4.1LG20g01480.1 | Cpe20g00149 | 486778 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe20g00149 | 343 | Gene3D | - | 78 | 145 | - | - | |
| Cpe20g00149 | 343 | SUPERFAMILY | Homeodomain-like | 78 | 145 | IPR009057 | - | |
| Cpe20g00149 | 343 | MobiDBLite | consensus disorder prediction | 164 | 202 | - | - | |
| Cpe20g00149 | 343 | Pfam | Homeodomain | 79 | 138 | IPR001356 | GO:0003677 | |
| Cpe20g00149 | 343 | SMART | HOX_1 | 76 | 143 | IPR001356 | GO:0003677 | |
| Cpe20g00149 | 343 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 50 | 343 | - | - | |
| Cpe20g00149 | 343 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 50 | 343 | IPR044555 | GO:0003700|GO:0099402 | |
| Cpe20g00149 | 343 | CDD | homeodomain | 80 | 140 | IPR001356 | GO:0003677 | |
| Cpe20g00149 | 343 | MobiDBLite | consensus disorder prediction | 171 | 202 | - | - | |
| Cpe20g00149 | 343 | ProSiteProfiles | 'Homeobox' domain profile. | 84 | 139 | IPR001356 | GO:0003677 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe09g01115 | Cpe20g00149 | CCT | |
| Cpe09g01115 | Cpe20g00149 | ECH | |
| Cpe04g01371 | Cpe20g00149 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g01242 | Cpe-Chr2:11163422 | Cpe20g00149 | Cpe-Chr20:844047 | 1.65E-28 | dispersed | |
| Cpe07g00494 | Cpe-Chr7:3226239 | Cpe20g00149 | Cpe-Chr20:844047 | 3.01E-30 | dispersed | |
| Cpe10g00163 | Cpe-Chr10:978616 | Cpe20g00149 | Cpe-Chr20:844047 | 2.71E-16 | dispersed | |
| Cpe10g00659 | Cpe-Chr10:3786192 | Cpe20g00149 | Cpe-Chr20:844047 | 1.96E-27 | dispersed | |
| Cpe11g00141 | Cpe-Chr11:767274 | Cpe20g00149 | Cpe-Chr20:844047 | 3.03E-28 | dispersed | |
| Cpe13g01073 | Cpe-Chr13:8702533 | Cpe20g00149 | Cpe-Chr20:844047 | 3.85E-29 | dispersed | |
| Cpe19g00855 | Cpe-Chr19:6310682 | Cpe20g00149 | Cpe-Chr20:844047 | 2.27E-28 | dispersed | |
| Cpe19g01046 | Cpe-Chr19:7227905 | Cpe20g00149 | Cpe-Chr20:844047 | 1.15E-17 | dispersed | |
| Cpe16g00572 | Cpe-Chr16:6512367 | Cpe20g00149 | Cpe-Chr20:844047 | 4.65E-30 | transposed | |
| Cpe20g00149 | Cpe-Chr20:844047 | Cpe04g01371 | Cpe-Chr4:11141487 | 6.96E-51 | wgd | |
| Cpe20g00149 | Cpe-Chr20:844047 | Cpe09g01115 | Cpe-Chr9:9602444 | 6.73E-93 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51099 | PF00046 | Homeodomain | 1.30E-19 | CL0123 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe20g00149 | - | - | cpep:111783016 | 645.195 |