Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00149 ATGTGGATGATGGGTTACAATGACGCCGGAGATTTGAGCGATTCCTTCACTCCTCGCCGCCTTAGGCCTCTCCTTCCTCGCCCTCTCTCTTCTCTTTCCTCCACCGCCCCCGTTAATCCTCCTTTCAACCTTATCCACACCAACGATTTCTTCTCCCAATTTCACCACATGGCCACCGTGACTGATCAGACCAAGAGAGAGTTGAACAACGCGCCACCGCCCGTCGTGGTTAGCTCGCGGTGGAACCCTACGCCGGAGCAGTTGAGAGTGTTGGAAGAATTGTATCGGCGGGGGACTCGAACTCCCTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGAGAACGCCAGAAACGACGTCGTCAGATGGAATCCGCCATCACCGCCGACCACTCCACTCGCGAAGCCGGAATCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTGTATGAAGAACAGACCAAAAACTGGGCACCCTCTTCCAACTGCACTACACTTCCGGAGGAATCTGCTACCATTCAACCACCGCCAACCCCTTGCACCACACAACATGGATGGGTCCAATTCCAAGACTTCCTTCGAAACAACAACAACAACACCAACAACAACAACGCACCCTCCTCCTCCTCCTTGCACTTCATGCATTCTCCCCCCACCACCGCTCTCGACGGCGGAGGAGCCCAGCTCATGATGAACACAGCCCTCATCCCCACCACCACCGCCGCCGCCTCCACAGTTACAACAATAATGCACTCAAAATCTCATTCTAATATTGGAGGCTTTGCACCAAATGGGGTGGAGGAATTGGAGGAATCAGAAGAAGCTGAAACCCTTCAACTTTTTCCTTTGTGCAGTGAGTCACGGAATGGTGAGATTAGTGAAGGGAAAAATGGGTTTGAAACGGTGGGAAGTTCAGCTAATATGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAACTGA 1032 50.87 MWMMGYNDAGDLSDSFTPRRLRPLLPRPLSSLSSTAPVNPPFNLIHTNDFFSQFHHMATVTDQTKRELNNAPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSTREAGILERKDSGSGRTVYEEQTKNWAPSSNCTTLPEESATIQPPPTPCTTQHGWVQFQDFLRNNNNNTNNNNAPSSSSLHFMHSPPTTALDGGGAQLMMNTALIPTTTAAASTVTTIMHSKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSESRNGEISEGKNGFETVGSSANMTPLQFFEFLPLKN 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 844047 848044 - Cp4.1LG20g01480.1 Cpe20g00149 486778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00149 343 Gene3D - 78 145 - -
Cpe20g00149 343 SUPERFAMILY Homeodomain-like 78 145 IPR009057 -
Cpe20g00149 343 MobiDBLite consensus disorder prediction 164 202 - -
Cpe20g00149 343 Pfam Homeodomain 79 138 IPR001356 GO:0003677
Cpe20g00149 343 SMART HOX_1 76 143 IPR001356 GO:0003677
Cpe20g00149 343 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 50 343 - -
Cpe20g00149 343 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 50 343 IPR044555 GO:0003700|GO:0099402
Cpe20g00149 343 CDD homeodomain 80 140 IPR001356 GO:0003677
Cpe20g00149 343 MobiDBLite consensus disorder prediction 171 202 - -
Cpe20g00149 343 ProSiteProfiles 'Homeobox' domain profile. 84 139 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00149 - - - cpep:111783016 645.195
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01115 Cpe20g00149 CCT
Cpe09g01115 Cpe20g00149 ECH
Cpe04g01371 Cpe20g00149 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01242 Cpe-Chr2:11163422 Cpe20g00149 Cpe-Chr20:844047 1.65E-28 dispersed
Cpe07g00494 Cpe-Chr7:3226239 Cpe20g00149 Cpe-Chr20:844047 3.01E-30 dispersed
Cpe10g00163 Cpe-Chr10:978616 Cpe20g00149 Cpe-Chr20:844047 2.71E-16 dispersed
Cpe10g00659 Cpe-Chr10:3786192 Cpe20g00149 Cpe-Chr20:844047 1.96E-27 dispersed
Cpe11g00141 Cpe-Chr11:767274 Cpe20g00149 Cpe-Chr20:844047 3.03E-28 dispersed
Cpe13g01073 Cpe-Chr13:8702533 Cpe20g00149 Cpe-Chr20:844047 3.85E-29 dispersed
Cpe19g00855 Cpe-Chr19:6310682 Cpe20g00149 Cpe-Chr20:844047 2.27E-28 dispersed
Cpe19g01046 Cpe-Chr19:7227905 Cpe20g00149 Cpe-Chr20:844047 1.15E-17 dispersed
Cpe16g00572 Cpe-Chr16:6512367 Cpe20g00149 Cpe-Chr20:844047 4.65E-30 transposed
Cpe20g00149 Cpe-Chr20:844047 Cpe04g01371 Cpe-Chr4:11141487 6.96E-51 wgd
Cpe20g00149 Cpe-Chr20:844047 Cpe09g01115 Cpe-Chr9:9602444 6.73E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51099 PF00046 Homeodomain 1.30E-19 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00149 Cpe_Chr20 FPKM 26.298025 30.052694 20.653709 20.580788 25.205143 25.122366 26.193867 9.626237 8.275751 9.031774