Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00161 ATGCGAACCCAGATGGGAACTCCTTGGCTTGCTCTGTTTCTTTTGGGGTTCTGTGTTCTAGTATCTACTGTGAAGCCAGATCTTGGCTCTGATAGAACAGCTCTGTTGGCCCTTCGCTCTGCTGTGGGTGGCCGAACTCTTCGGCTCTGGAATGTGACTGATCAGAATCACTGTTCTTGGCCTGGGATTCAATGCGAGGACAATCGTGTCACCGTTCTGCGTCTTCCCGGAGAGGCGCTTTTTGGTCAATTACCGACCGGCATTTTTGGGAACTTGACTCAGCTTCGCACTCTCAGCCTTCGGCTCAACGCCCTTTCCGGTCCGCTCCCATCAGATCTCTCTGCCTGCATTAATCTTCGCAACCTCTATTTGCAAGGTAATGAGTTTTCAGGTCTGGTCCCTGATTTCTTGTTCCAGCTTCATGATCTTGTTCGTCTTAATTTGGCGTCCAATAACTTTTCTGGGGAGATCTCTTCTGGGTTCAACAATTTGACCCGTCTTAGGACACTGTTCCTCGAGAACAATCGCCTATCTGGGTCTATCCCGGATTTGAAGATCCCTATGGATCAGTTCAATGTTTCTAACAATCAATTAAATGGGTCGGTTCCAAAGGGATTACAGTCGTTTTCTTCGCGTTCCTTTTTGGGCAATTCTCTCTGCGGCCGCCCTCTAGAGGTTTGCGTTGGTGATCTTGTTGTGCCGACAGGGGAGGTTGGGGACAATGGTGGCTCTGGACACAAGAAAAAGCTGTCGGGGGGAGCCATTGCTGGGATTATCATTGGATCTGTACTGGGTTTTGTATTGATACTTGTAATCTTAATGCTTTTGTGCCGAAAGAAAAGTGACAAGCAAACGCGTTCAGTCGATTTAGCCACAGTGAAGGTTCCTGAAGTTGAAGTTCAGGCGGGTAAGCCAGTCGGCGATATTGAAAATGGCGGTCATAGTGATGGTTTTACTGTACCAGTCACTACCACTGCCACTGCCACTGCCACTGCTGCTGCAACAGCGGCGGTGGCAACAGTGAATGGCAATGGAACTGGGTCTAAAAAATTGGTGTTTTTTGGCAATGCTGCAAGGGTTTTTGATTTGGAGGATCTTTTGAGGGCTTCAGCCGAAGTGTTGGGGAAAGGAACCTTTGGGACTGCTTACAAAGCTGCATTGGAAGTGGGTTCTGTAGTGGCTGTGAAGAGGTTGAAGGATGTCACCATAACTGAGAGGGAATTCAGAGAGAAGGTTGAAGCTGTTGGAAACAAAGGAGCTGGAAGGACTCCATTGAGTTGGGAAATCAGGTCTGGAATTGCCCTTGGAGCTGCTCGTGGAATTGAATATCTGCATTCACAAGGTCCTAATGTCTCCCATGGAAACATAAAATCTTCGAATATTCTACTAACCAAATCCTACGATGTTCGAGTCTCCGATTTCGGTTTAGCACATCTTGTTGGACCATCGTCCAGCCCCAACAGAGTAGCTGGTTACCGCGCACCAGAGGTCACTGATCCTCGTAAAGTATCCCATAAGGCTGATGTGTATAGTTTTGGCGTATTGCTATTGGAGCTTTTGACAGGAAAGGCTCCTACCTACTCCCTTTTGAATGAGGAAGGAGTTGATTTACCTAGATGGGTGCAGTCAGTTGTTAGGGAGGAATGGACTTCTGAAGTTTTCGACCTCGAACTTCTTAGGTACCAAAACATCGAGGAGGAAATGGTTCAACTATTGCAGCTTGCAGTCGATTGCGCAGCTCAGTATCCTGACAAGCGCCCCACAATGTCCGAAGTCACAAAGCGTATAGAAGAGCTTCGCCAATCCAGCCTACACGAAGTTGTCAATCCACAACCCGACGCTGCTCGTGAATCAGACGACATGTCTTCTAGGTGA 1875 47.95 MRTQMGTPWLALFLLGFCVLVSTVKPDLGSDRTALLALRSAVGGRTLRLWNVTDQNHCSWPGIQCEDNRVTVLRLPGEALFGQLPTGIFGNLTQLRTLSLRLNALSGPLPSDLSACINLRNLYLQGNEFSGLVPDFLFQLHDLVRLNLASNNFSGEISSGFNNLTRLRTLFLENNRLSGSIPDLKIPMDQFNVSNNQLNGSVPKGLQSFSSRSFLGNSLCGRPLEVCVGDLVVPTGEVGDNGGSGHKKKLSGGAIAGIIIGSVLGFVLILVILMLLCRKKSDKQTRSVDLATVKVPEVEVQAGKPVGDIENGGHSDGFTVPVTTTATATATAAATAAVATVNGNGTGSKKLVFFGNAARVFDLEDLLRASAEVLGKGTFGTAYKAALEVGSVVAVKRLKDVTITEREFREKVEAVGNKGAGRTPLSWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDVRVSDFGLAHLVGPSSSPNRVAGYRAPEVTDPRKVSHKADVYSFGVLLLELLTGKAPTYSLLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNIEEEMVQLLQLAVDCAAQYPDKRPTMSEVTKRIEELRQSSLHEVVNPQPDAARESDDMSSR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 907565 910199 - Cp4.1LG20g01680.1 Cpe20g00161 486790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00161 624 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Cpe20g00161 624 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Cpe20g00161 624 MobiDBLite consensus disorder prediction 602 624 - -
Cpe20g00161 624 Pfam Protein kinase domain 432 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00161 624 PANTHER INACTIVE RECEPTOR KINASE-RELATED 416 619 - -
Cpe20g00161 624 PANTHER INACTIVE RECEPTOR KINASE-RELATED 13 416 - -
Cpe20g00161 624 SUPERFAMILY Protein kinase-like (PK-like) 372 602 IPR011009 -
Cpe20g00161 624 Gene3D Ribonuclease Inhibitor 30 141 IPR032675 -
Cpe20g00161 624 PANTHER OS05G0588300 PROTEIN 416 619 - -
Cpe20g00161 624 PANTHER OS05G0588300 PROTEIN 13 416 - -
Cpe20g00161 624 Gene3D Ribonuclease Inhibitor 144 227 IPR032675 -
Cpe20g00161 624 Gene3D Transferase(Phosphotransferase) domain 1 417 620 - -
Cpe20g00161 624 ProSiteProfiles Protein kinase domain profile. 244 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00161 624 Gene3D Phosphorylase Kinase; domain 1 335 416 - -
Cpe20g00161 624 SUPERFAMILY L domain-like 47 212 - -
Cpe20g00161 624 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00542 Cpe-Chr13:5489423 Cpe20g00161 Cpe-Chr20:907565 1.33E-114 dispersed
Cpe18g00458 Cpe-Chr18:5556028 Cpe20g00161 Cpe-Chr20:907565 2.97E-160 dispersed
Cpe20g00161 Cpe-Chr20:907565 Cpe10g01009 Cpe-Chr10:5791475 1.10E-140 dispersed
Cpe02g01105 Cpe-Chr2:10106454 Cpe20g00161 Cpe-Chr20:907565 5.10E-17 transposed
Cpe20g00161 Cpe-Chr20:907565 Cpe09g01107 Cpe-Chr9:9549259 3.73E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63069 PF00069 Pkinase 8.50E-25 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00161 - - csv:101222458 1036.94