Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00169 ATGCTGGCTGATCTCTCCTCCCCTTCCCTTCCTTGCTTTGAGCCTTTGCCTAATTGCTTTGAAAGCAATGGAACCAATACCAAAAGAAAAAGAAGGCCTGCTGGGACTCCAGACCCAGATGCCGAAGTTGTTTCTCTTTCTCCCAAAACCCTATTGGAATCAGATCGTTATGTTTGTGAGATCTGTAATCAAGGGTTTCAAAGAGATCAAAATCTACAAATGCATCGACGTCGACATAAGGTGCCGTGGAAGCTTTTGAAGAGAACTGAGCCGACGACCGCGGTTAGAAAACGAGTCTTTGTTTGCCCCGAACCGAGCTGTTTACACCATAACCCTACGCATGCTTTGGGGGATTTGGTGGGAATAAAGAAACACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAAATGTTCTAAAGGGTATGCTGTTCAATCCGATTATAAAGCTCATCTCAAAACATGTGGAACTCGAGGCCATTCCTGCGATTGTGGTCGGGTTTTCTCAAGGGTGGAGAGCTTCATAGAACATCAAGATAGCTGCAAATTGGGTCATCATCATCAACAATCAGAACAAAAGCTTCCATGTTTATCAAGAACAGCTTCGAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTCAACAAAAACCATACAATAATTCCCCAAAGGATCATTACCCACCATCCACAAAACTTGGAACTTCAACTCTCCAACAATTCAACTTCTATTCACGTATCCGTTTCGCCGAAACGACGCGAAAATTACTCGACCCATTTGCAGCTTTCCATTGGTTCGTGCAATTACGATGAGAAAAACGACGACGGCGACGACGATCATGACGAGAAAACAAGAAATGGGTTGGAATTTTTGAAGGTCAAAGAGGAAGCTAAAGAGCAAATGAGAGTAGCAATGGAAGAGAAAGCTATAGCTGAAGAAGCAAGAAATGAAGCAAAGAAGCAAATTGAAATAGCTGAAAAGGAGTTAGCTAATGCGAAGAGAATGAGACAAGAAGCACAAGGTGAGCTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATGAAGCAAATCAACTCCACCATTCTTCAAATCACTTGTCAAGTTTGTAGGCAACATTTTGAGCCATTCCCAACCATTTGA 1158 42.31 MLADLSSPSLPCFEPLPNCFESNGTNTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEPTTAVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHHQQSEQKLPCLSRTASSPTPSPSSDTNFSFFNKNHTIIPQRIITHHPQNLELQLSNNSTSIHVSVSPKRRENYSTHLQLSIGSCNYDEKNDDGDDDHDEKTRNGLEFLKVKEEAKEQMRVAMEEKAIAEEARNEAKKQIEIAEKELANAKRMRQEAQGELQRALALKEHAMKQINSTILQITCQVCRQHFEPFPTI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 959200 961335 - Cp4.1LG20g01650.1 Cpe20g00169 486798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00169 385 SMART c2h2final6 136 163 IPR013087 -
Cpe20g00169 385 SMART c2h2final6 57 79 IPR013087 -
Cpe20g00169 385 SMART c2h2final6 100 130 IPR013087 -
Cpe20g00169 385 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cpe20g00169 385 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Cpe20g00169 385 MobiDBLite consensus disorder prediction 195 217 - -
Cpe20g00169 385 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 380 - -
Cpe20g00169 385 MobiDBLite consensus disorder prediction 23 43 - -
Cpe20g00169 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cpe20g00169 385 Coils Coil 300 362 - -
Cpe20g00169 385 Gene3D Classic Zinc Finger 35 100 - -
Cpe20g00169 385 PANTHER OS03G0310200 PROTEIN 14 380 IPR039288 GO:0009630
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g01101 Cpe20g00169 CCT
Cpe09g01101 Cpe20g00169 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01099 Cpe-Chr2:10053745 Cpe20g00169 Cpe-Chr20:959200 4.27E-159 dispersed
Cpe20g00005 Cpe-Chr20:40531 Cpe20g00169 Cpe-Chr20:959200 8.08E-167 dispersed
Cpe20g00169 Cpe-Chr20:959200 Cpe07g00434 Cpe-Chr7:2791390 3.00E-74 dispersed
Cpe20g00169 Cpe-Chr20:959200 Cpe09g01101 Cpe-Chr9:9501073 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51102 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00169 K25871 - csv:101210748 645.195