Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00175 ATGTCTTCGTCCGGCGGTAACTATGGCGACGGAGCTGGCGGTGGCGCCGCCTCGCATGGCCCTCAGCTCTTCTTCTGCTATACGTGCAATCGTACGGTAACCATTACTCCCTCATCATCCTCCGATCTTTTGTGCCCCAACTGCAACGATAGCTTCGTTGAAGAAATGGATAGTCCAAACCCTAACCCTAGCCCTGTTCCCAATCCTTTCCTCTCCTTCACATCCGAGGCATTTCCGCCGTTCAGCTCCGGTGGCGGTGGAAATGGCGGTGGAAATGGAGGTTTCCCGATTATATTCTCCACGACATCATCATCCGGTGGCATTGGCGGTGGCGGTTCTATGATGAATGATCTATCGGCGCTATTGGGAGGCGGTTCTCATCGGTCGACGTCCTTGCAAGACCCTGACGGTTTTAGTCCCTTGCTCTTCCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAGAACGCATCGGGAGAGGCGTTTCATCCCTCTTCCAATTTCAATCTTGGAGATTACTTCTTCGGCCCCGGCCTCGAGCAGTTGATTCAACAACTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCCGCTTCAAAGTCGTCGATTGAGGCACTTCCAAATATCAAAATTACGGAGGAATTGTTGGCCTCAGATTCTTCCCAGTGCGCTGTTTGTAAGGATACGTTTGAGCTCAACGAGGAGGCGAAACAGATGCCTTGCAAACACATATATCACGCAGATTGTATCATTCCATGGCTGGAATTGCATAATTCTTGTCCGGTATGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGGAATCGTGGGACTTCAACTCCTAATCGAAGTCAAAGCGAAAGTCAACCCTTTGGTGATTCTTCTATCCGTGGGGAAAATGTTGGTGGAAGCGATCCTAATTCCGACGAGAATTCACCGAGTCAACAGGAGCGGAGGGTTAGGAGGATCGCATTTCCTTGGCCATTCAGAGGTTTTGGTTCGGCCGCTGAGACTAGTAACAGCGGAGGTGGCAACAATAGTGGAAATAGCGACGAACCTAGCTCCAGAAATAGGGGAAATCAGAGCTCTTCAGAACCCATGCAGGAAGATCTTGATTGA 1140 49.82 MSSSGGNYGDGAGGGAASHGPQLFFCYTCNRTVTITPSSSSDLLCPNCNDSFVEEMDSPNPNPSPVPNPFLSFTSEAFPPFSSGGGGNGGGNGGFPIIFSTTSSSGGIGGGGSMMNDLSALLGGGSHRSTSLQDPDGFSPLLFLQNYLQSANVQLVIQNASGEAFHPSSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSSIEALPNIKITEELLASDSSQCAVCKDTFELNEEAKQMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRNRGTSTPNRSQSESQPFGDSSIRGENVGGSDPNSDENSPSQQERRVRRIAFPWPFRGFGSAAETSNSGGGNNSGNSDEPSSRNRGNQSSSEPMQEDLD 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1001030 1002169 + Cp4.1LG20g01760.1 Cpe20g00175 486804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00175 379 SUPERFAMILY RING/U-box 208 276 - -
Cpe20g00175 379 MobiDBLite consensus disorder prediction 341 379 - -
Cpe20g00175 379 MobiDBLite consensus disorder prediction 282 318 - -
Cpe20g00175 379 MobiDBLite consensus disorder prediction 273 379 - -
Cpe20g00175 379 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
Cpe20g00175 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 274 IPR013083 -
Cpe20g00175 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 15 345 - -
Cpe20g00175 379 Pfam Ring finger domain 226 268 IPR001841 -
Cpe20g00175 379 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630
Cpe20g00175 379 SMART ring_2 227 267 IPR001841 -
Cpe20g00175 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 15 345 - -
Cpe20g00175 379 CDD RING-H2_RNF126_like 226 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00175 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101205252 626.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01094 Cpe20g00175 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00305 Cpe-Chr2:1592127 Cpe20g00175 Cpe-Chr20:1001030 2.16E-25 dispersed
Cpe09g00183 Cpe-Chr9:1058612 Cpe20g00175 Cpe-Chr20:1001030 3.53E-26 dispersed
Cpe13g00621 Cpe-Chr13:5974034 Cpe20g00175 Cpe-Chr20:1001030 3.11E-15 dispersed
Cpe13g00954 Cpe-Chr13:7992308 Cpe20g00175 Cpe-Chr20:1001030 1.01E-25 dispersed
Cpe13g00998 Cpe-Chr13:8246715 Cpe20g00175 Cpe-Chr20:1001030 4.42E-37 dispersed
Cpe16g00943 Cpe-Chr16:8679463 Cpe20g00175 Cpe-Chr20:1001030 3.25E-47 dispersed
Cpe19g00172 Cpe-Chr19:1396811 Cpe20g00175 Cpe-Chr20:1001030 4.08E-34 dispersed
Cpe20g00175 Cpe-Chr20:1001030 Cpe19g00238 Cpe-Chr19:1960275 1.02E-46 dispersed
Cpe12g00796 Cpe-Chr12:7184900 Cpe20g00175 Cpe-Chr20:1001030 5.54E-27 transposed
Cpe20g00175 Cpe-Chr20:1001030 Cpe09g01094 Cpe-Chr9:9462056 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00175 Cpe_Chr20 FPKM 0.0 0.0 5.294472 5.943144 9.456867 10.228171 10.47605 0.0 0.0 0.0