Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00182 ATGAAGAATTTCGCGTTACTGTCTTTTCTTTTCATTCTCCTTGCCTCTGAGGTCCGCGTCTCCAGAGCCGACGCCTCGCCGGACGCCGTCCGCGACATCGACGGCAAGAAGCTCCGAGCCGGCGTCAACTACTACATCCTCCCTGTTTTCCGCGGAAGAGGCGGCGGCCTAGCCCTAGGCAACCTCCAATCGGACAAATGTCCACTCAACGTCGTTCAAGAACAGTTTGAATTAATGAACGGCCTTCCCGCGGCATTTTTGCCTGTAAACCCTAAAAAAGGCGTCGTTCGAGTTTCGACGGATTTAAACGTCCAATTCGAGGCCAGTACGATCTGCGCCACATCGACGGTATGGAAATTGGACAAATTCGACGAATCGACGAAACAGTGGTTCATCACGATCGGCGGAGCCAGAGGAAATCCAGGCGTCAAGACGGTGGACAATTGGTTCAAAATTGAGAAACACGGTAACGATTACAAATTCAAATTCTGTCCGACTGTGTGCGATTTCTGTAAAGTTATGTGCAGAGATGTTGGAATCTTCTTCAAGAATGGAAAGAGGGCTCTGGCTTTGAGCGATACGCCATTCCCTGTCATGTTCAAGGTAGTTTAA 612 49.84 MKNFALLSFLFILLASEVRVSRADASPDAVRDIDGKKLRAGVNYYILPVFRGRGGGLALGNLQSDKCPLNVVQEQFELMNGLPAAFLPVNPKKGVVRVSTDLNVQFEASTICATSTVWKLDKFDESTKQWFITIGGARGNPGVKTVDNWFKIEKHGNDYKFKFCPTVCDFCKVMCRDVGIFFKNGKRALALSDTPFPVMFKVV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1031937 1032548 - Cp4.1LG20g01850.1 Cpe20g00182 486811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00182 203 PANTHER KUNITZ TRYPSIN INHIBITOR 2 7 201 - -
Cpe20g00182 203 Gene3D - 24 202 - -
Cpe20g00182 203 Pfam Trypsin and protease inhibitor 30 201 IPR002160 GO:0004866
Cpe20g00182 203 PANTHER KUNITZ TRYPSIN INHIBITOR 2 7 201 IPR002160 GO:0004866
Cpe20g00182 203 SMART kul_2 29 203 IPR002160 GO:0004866
Cpe20g00182 203 SUPERFAMILY STI-like 26 201 IPR011065 -
Cpe20g00182 203 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 29 58 IPR002160 GO:0004866
Cpe20g00182 203 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 67 87 IPR002160 GO:0004866
Cpe20g00182 203 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 149 168 IPR002160 GO:0004866
Cpe20g00182 203 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 172 201 IPR002160 GO:0004866
Cpe20g00182 203 CDD STI 29 201 IPR002160 GO:0004866
Cpe20g00182 203 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 30 46 IPR002160 GO:0004866
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00182 - - - csv:101207401 340.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00916 Cpe-Chr7:8216104 Cpe20g00182 Cpe-Chr20:1031937 4.97E-19 dispersed
Cpe20g00182 Cpe-Chr20:1031937 Cpe11g00949 Cpe-Chr11:8022995 2.04E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g941 . . . . . . . . . . . . . . . Cpe20g00182 . . . . . . . . . . . . . . . . . . . . . Chy12g01355 Cme12g01786 . . . . . . . . . . . Cma13g00957 . Car13g00794 . . . . . . . . . . Cla01g01457 Cam01g1524 Cec01g1565 Cco01g1610 Clacu01g1548 Cmu01g1438 Cre01g1360 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002445 5 4 0 5 2 1 1 1 1 1 1 1 1 3 3 0 1 2 1 1 1 2 1 3 8 2 1 1 1 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00182 Cpe_Chr20 FPKM 11.068852 11.734531 11.873515 15.086608 0.0 3.312293 2.830972 21.69198 21.712563 23.391249