Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00187 ATGCCGCCGAGACGATATGCTTTTGGACGGGCCGATGAGGCCACCCACCCTGACTCCATTAGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTCTTCGCCGGGGAAGGCTCTGTTCTTGCTCTTGACAAAATTTTCAGTCCAGCAGATTATGGAAGTTATGGCCATGGAGGTTACAGTCACGGTCACGGTTATGGTCGGAGGAGGACCGACACGGGCCGAGGTGCATCCGATTTAGTTGTGATAGCGATAGCGCACGCATTCGCTCTGTTCTCAGCGGTTGCGGCGAGTATCAACATCTCCGGTGGGCATGTCAATCCGGCTGTGACTTTTGGCGCTCTTCTTGGAGGGAGGATATCACTTATCCGTGGAATTTTCTATTGGGTAGCTCAAATTTTGGGTGCCATCGTCGCTTCACTGCTCTTGAGACTCGCAACCGGTGGCATGAGGCCTATGGGGTTTTTCGTTTCATCAGGGATATCAGAAATGCACGGCTTTCTGCTAGAGATAGTGCTGACGTTCGCCTTGGTGTACACAGTGTACGCAACAGCAATAGACCCAAAGAGAGGCAGTTTGGGGACGATAGCGCCACTGGCAATCGGGTTAATAGTGGGGGCTAATATTCTGGTGGGTGGGGCGTTTGATGGGGCGTGCATGAACCCGGCGAGGGCGTTTGGGCCGTCGTTGGTGGGGTGGAGATGGGACAATCATTGGATCTACTGGATCGGGCCATTGCTGGGAGGTGGGCTTGCTGCGCTTGTTTATGAGTACTTGGTGATTCCTGTTGAGCCTCCTCTGCATACTCACCAGCCCTTGGCTCCTGAGGATTACTAA 840 53.33 MPPRRYAFGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFSPADYGSYGHGGYSHGHGYGRRRTDTGRGASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRGIFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISEMHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1083503 1084938 + Cp4.1LG20g01900.1 Cpe20g00187 486816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00187 279 PANTHER AQUAPORIN-8 3 49 IPR034294 -
Cpe20g00187 279 PANTHER AQUAPORIN-8 72 279 IPR034294 -
Cpe20g00187 279 PANTHER - 72 279 - -
Cpe20g00187 279 PANTHER - 3 49 - -
Cpe20g00187 279 TIGRFAM MIP: MIP family channel proteins 25 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe20g00187 279 SUPERFAMILY Aquaporin-like 13 270 IPR023271 -
Cpe20g00187 279 Gene3D Glycerol uptake facilitator protein. 5 265 IPR023271 -
Cpe20g00187 279 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe20g00187 279 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe20g00187 279 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe20g00187 279 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe20g00187 279 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe20g00187 279 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe20g00187 279 Pfam Major intrinsic protein 14 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe20g00187 279 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Cpe20g00187 279 CDD MIP 21 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00246 Cpe-Chr10:1431950 Cpe20g00187 Cpe-Chr20:1083503 6.50E-105 dispersed
Cpe19g00437 Cpe-Chr19:3899285 Cpe20g00187 Cpe-Chr20:1083503 1.34E-88 dispersed
Cpe20g00187 Cpe-Chr20:1083503 Cpe10g00212 Cpe-Chr10:1212635 3.29E-35 dispersed
Cpe20g00187 Cpe-Chr20:1083503 Cpe09g01081 Cpe-Chr9:9366928 1.52E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00187 K09873 - csv:101208863 476.478