Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00195 ATGGAATGGAAGAACTATTATTTGGACGCCATATTTGTTCCTCTTGGTCTTCTCCTCACCTTCACCTATCATGCTTGGTTATGGTACAAGGTTAAAACTCAGCCACTCGCCACCTTCATCGGAGTCACTGCCACCGTCCGCCGCCACTGGATCTCCGCCATGCTCCAGGACATAGACAAGAAGAACATCCTTGTCGTTCAAACCCTGAGGAACATGATAATGGGTTCAATCTTGATGGCCACCACCTCGATTCTCCTCTGCGCCGGCCTCGCCGCCGTCCTCAGCAGCACCTACAGCATCAAAAAGCCGCTGACCAACGCCGTCTACGGTGCCCACGGGGAGTTCACAGCGGCTCTGAAGTTTATAACAATCCTAACCATATTCATCTTCTCGTTCTTCTTCCACAGTTTGTCGATCAGGTTCATGAACCTTGGTGGGGTTCTGATCAGCGCCCCATTGCAGCCCTTGTCCGTGCTGACAGAGCAGCATTTGGTCGACATTTTGGAGAAAGGCTGTGTTTTGAACACCATTGGAAATAGACTCTTCTATTCAGCTCTCCCATTGGTGCTTTGGATTTGTGGGCCGTTGCTGGTTTTCTTGTGCTTTGGGGTTATGCTGTTTGTGCTTTATAATCTTGACTTTGTGTGTAACAAGAGGATTAATGGGAAGATGAATGAGTGA 681 48.9 MEWKNYYLDAIFVPLGLLLTFTYHAWLWYKVKTQPLATFIGVTATVRRHWISAMLQDIDKKNILVVQTLRNMIMGSILMATTSILLCAGLAAVLSSTYSIKKPLTNAVYGAHGEFTAALKFITILTIFIFSFFFHSLSIRFMNLGGVLISAPLQPLSVLTEQHLVDILEKGCVLNTIGNRLFYSALPLVLWICGPLLVFLCFGVMLFVLYNLDFVCNKRINGKMNE 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1125507 1126788 + Cp4.1LG20g01880.1 Cpe20g00195 486824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00195 226 PANTHER PLANT/F12B17-70 PROTEIN 1 222 - -
Cpe20g00195 226 PANTHER - 1 222 - -
Cpe20g00195 226 Pfam Protein of unknown function, DUF599 11 216 IPR006747 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00195 - - - cmos:111431474 429.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00410 Cpe-Chr6:2337470 Cpe20g00195 Cpe-Chr20:1125507 3.87E-90 dispersed
Cpe07g00234 Cpe-Chr7:1525360 Cpe20g00195 Cpe-Chr20:1125507 1.89E-88 dispersed
Cpe18g00691 Cpe-Chr18:6891090 Cpe20g00195 Cpe-Chr20:1125507 4.38E-23 dispersed
Cpe20g00195 Cpe-Chr20:1125507 Cpe09g01126 Cpe-Chr9:9672902 1.89E-34 dispersed
Cpe20g00195 Cpe-Chr20:1125507 Cpe09g01073 Cpe-Chr9:9319983 4.27E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g891 Blo04g00709 . . . . . . . Cmo13g00807 . . . . . . Cpe20g00195 . . . . . . . . . . . . . . . Cone2ag0948 . . . Lsi02g00463 . Chy12g01207 Cme12g01628 . . . . . Bpe15g00664 Bma03g00757 . . . . Cma13g00776 . Car13g00622 . . . Bhi08g01692 Tan05g2896 . Lac10g0535 . . . Cla03g00320 Cam03g0336 Cec03g0328 Cco03g0342 Clacu03g0338 Cmu03g0944 Cre03g0637 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000958 3 4 2 3 3 2 4 2 2 2 2 2 5 2 3 4 2 4 6 2 3 2 3 3 2 2 2 5 3 1 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00195 Cpe_Chr20 FPKM 31.839518 34.468155 42.230053 46.474239 21.664936 23.304928 24.528433 42.527359 42.962986 49.638634