Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00197 ATGGGGAAGTCGCCGGGAAAATGGATTAAGACCATATTGTTTGGGAAGAAATCTTCCAAATCCAATCTTTCCAAGGGCAGAGAGAGAAATGGAAACGGGAAAGAAGTATTGGTTTCTACCAAGGCATCAGAGACGACTTCTGTTATCAGTCATCCTGTAGCTTCACATCCAACCCCAAATGCCATTGATGCAAATGAAGGCGTGTTAAAAATTACCGACAATGAGGCCGCTAATGTGTCGCATGAAAGATCAATATCAATCCCAGGAAATCAAGATGCCGAAATTCAAGGATCTGCCTGCCAAGATGCACCATCTGATTCTGAGAGAATCCGTGAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTCGCGGTTATTTGGCTCGCCGAGCATTTCGAGCCCTCAAAGGTATCATTAGGCTGCAGGCACTTATTCGTGGTCATTTGGTAAGGAGACAAGCTGTTGCTACTCTATGTTGTTTGCTCGGAATTGTCAAGTTTCAGGCTATTGCTCGGGGAAGAAGAGTAAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAACAAATGTAGATTAGTGCAGCCACAGGATCAACCCTTAGTGGATCCTGCTGGAGTAAGTCTCTCTACACGAATGGCGAAACTTTCTGCAAATGCTTTCACTATGAAGCTTGCTTCATCTACAACTGCAAAGCCTATGCAACTCTATTTTGATAATGGAGATGAAAATTCAGTCATGAAATGGTTAGAACGCTGGTCAAATTCTAGATTTTGGAAACCGATTCCTCACGTAAAAAAAGCTCCAGAGACGAAATCTCAAAGAAGGCTGAGCACTGGTCAAACTGGAGAGGCACATACTGTTAGATCAAAACGCACAAGGAGAGTTCCTACTGTAAACAACGACGGTGCTACTGTCCAATCATCTACTGAATTTGAGAAACCGAAACGTAATTTTAGGAAACCCTCGAGTCATTCAGCTGCAGAGCAGGTTCAGGAGAATCCTCAAATGGAGCTTGAAAAGGTCAAACGGGGTCTGAGAAAGGTCCATAACCCTGTCCTTGATAATCCTGCCGAAAAAGAAGTAGGTGATGAGAAGCACAAGGACAGTTTGGACAAGGCTTCTAATGGTCTAGGCCGTGACGTTTTGGCAAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAGGAGGCAATCTCAACGATACCCGTCCAGCCTGACTTGGAAACAACTCCTGAGCCATTACCTGAGCCATTACCGATAGAATCGATACTTAATGTACCTAATGGTGTTCCAGTTGAAGATTCACAGCAGCCTTTGATTGAGAGTAGTGACAAAGATAAGAACATTGCTGGAGATGAGGCTGCTGAGGAGACTAAGCCTTTGGCAGAGAGCTACCATAAAGATGAACTCAATCCATTATCAAATGGAGAATTGAACCACAAGGACGATTATACTAACAACGAGAACCCGAAATCTGGCAGGAAAGCCTCGACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGGTTGCAGCACAGCCCGACCGTACCTAGCTACATGGCAGCAACTGAATCTGCCAAGGCAAAACTGAGAGCACAAGGATCACCAAGATTTAGACAGGATAATGAAAGAAATAACCTCAACCGACGACATTCTTTACCGTCGCCAATGAATGCTAAAATTAGCTCACAGTCACCCCGAACACAAAGACTTGTTCATTCAGGTGGAAAAGGAGGAAATAAAAATGACAAGGCGCTTCTCGGATCAAGAGATGAAAATGTCAACAACGAATTGGATAAGCCGAAGAACAAGTGTGGTTGTGCTTGTGTTGATACAAATGGAGATGGTAAATGTGAGAAAGTTTGTGGGTTAGAGTACTCAACGTTGATACAAGCAGCAAGCTGCCCCATTCCAAGTCCTCCAAAATGGCCTCCCATTTTGCAAATGCCTGCTCCTGATTTCCGTGCTGTGAGAACAGATTTTTTTCCACATAAAGACTTGCCAAATGAATCATGCAGGGAGTCAATGTCATGTCCTGTTACTATGCTTTTCACTGGAAATAATCGCTCATTTGGAAATATTTTGGCTGGAAGTATGGTCCCTAGTTCTTTGACTTGGAATTCTTCTGATGTTCTGTATGGTGCATCTCTTAACGTTTTGGGATCAGAATCGAGGCCTACAACAAACAATTTTCTTGATCCTGCTTTCATTTCAAACCTTCCTTTATATTATATGCAACGTCAGTGTGCAGCAGGCTCGACATTGTTAATTCCCGTTTCAATATTCTCTCTTTCAAAGACACAAGATATTACATGTGTTCAAGGTCTACCATTGTGGCGCAATAGTTCTTCAGAGGTGAATGATGAGATATACAAAGGTTACCAAAACGGGAATTCAGAGGGGAAAATCAATGAGATTCTTTCAGGTTTTGATTTCTTAAATTCAGATCGGAACAATTTTAATGTGACTATATGGTATAATTCATCTTATAAGAGTGATATTGGCCGTTCTTCTAATGTTTTGTTGCGGGTTCCACGCCTTGTTAATCTGGTATCCAATGGCTACCTTAAATCTTTGTTTGGAGCGGGCACAGAGATGCCCTTCGAGTTTGTCAAAGAAATGCCAAAACCTGCAACAAAGATCAAACTGGATTTCTCTTCTCTGCTTGGTGCACTCTTCTTTACGTGGGTCATCCTTCAGCTTTTTCCTGTTATCTTGACATCGTTGGTATATGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATGGTCCTTATTGGATGATTTCATACGCTTATTTTCTCACAGTTTCTGCAGTATACATGTTTTGTTTTGTGATGTTTGGTTCAGTGATAGGGCTAAAATTTTTCACAATGAATGACTACAGCATCCAGTTTGTGTTTTATCTCTTATTTATAAATTTGCAAGTCTCCCTAGCCTTTCTAGTTGCTGCCATGTTTTCAACTGTCAAAACTGCTGAAGTGTCGACATATATATGTGTCTTCGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAATTTTTTGTTGAAGATCCATCATTCCCACGAGGATGGATCATAGTTATGGAGTTATACCCTGGATTTTTGCTATATCGTGGGTTGTATGAGTTTGCATTTTATTCTTTCACTGGGAATCTAATGGGAACTTACGGGATGCGGTGGAAAGATTTGACTGATAGTATTAATGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTGGTGCTTCTAGTTGCATTCTGGATCGATCGAGGTTTATCGACAGGAAGTTGGAAGCATCCTTTATTTTTCCTTCAAAGACGTGACAAGAAACCTCCATCTCAGAATCCTGGTTTAGAAAGGCAAGGATCAGAAGTCTTGGTTCAGATTGATCAACCTGATGTCAAAGAAGAGAGGGATAAGGTTGAAAAGTTGCTAAAGGAAGGAGATCCAAGTCATGTCATCATTTGTGACCATCTCAAAAAGGTGTATCGAGGAAAGGATGGGAACCCTGAGAAGTTTGCAGTTAGGGGACTATCTCTTGCTTTGCTTCGAGGAGAATGCTTTGGAATGCTAGGTCCTAATGGTGCAGGAAAGACCTCCTTTATCAGTATGATGATTGGTCTTATAAAACCCACCGCTGGAACAGCCTTTGTCGAAGGTCTGGACATTAGGACCGAGATGGATGGCATATATGCAAGCATGGGTGTTTGTCCACAGCATGACCTGCTATGGGAAACCTTGACAGGAAGGGAGCACCTACTCTTTTATGGCAGACTGAAGAATTTAAAAGATTCTGCTTTAATACAAGCAGTGGAAGAATCTCTCAAGGGGGTCAACCTCTTCCATGGAGGAGTAGCGGATAAACAAGCTGGGGAGTACAGTGGAGCGCATTCTATGGAAGAGGCGGAAGTCTTGTGCGATCGTATTGGAATTTTTGCAGATGGAAGCCTTCAGTGTATTGGAAATCCAAAAGAGCTTAAAGCCAGATATGGTGGGGCTTATGTATTGACGATGACAACATCTCCTGCTCATGAGGGAGATGTTGAGAACATGGTGAAGCGTTTGGCCCCTGGAGCTAGCAAGATATACCGCTTATCTGGAACCCAAAAATTTGAGCTTCCAAAACACCAGGTTCGGATTGCAGATGTGTTCCAAGCAGTGGAAAATGCCAAAAGCAGGTTTGCGGTATTGGCTTGGGGTTTGGCTGACTCCACTTTAGAGGATGTCTTTATCAAAGTTGCTAATGGCACCGAGTCATCAGATACGCTTTCTTGA 4296 42.64 MGKSPGKWIKTILFGKKSSKSNLSKGRERNGNGKEVLVSTKASETTSVISHPVASHPTPNAIDANEGVLKITDNEAANVSHERSISIPGNQDAEIQGSACQDAPSDSERIREEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCLLGIVKFQAIARGRRVRLSDVGFEVQNKCRLVQPQDQPLVDPAGVSLSTRMAKLSANAFTMKLASSTTAKPMQLYFDNGDENSVMKWLERWSNSRFWKPIPHVKKAPETKSQRRLSTGQTGEAHTVRSKRTRRVPTVNNDGATVQSSTEFEKPKRNFRKPSSHSAAEQVQENPQMELEKVKRGLRKVHNPVLDNPAEKEVGDEKHKDSLDKASNGLGRDVLARGTSNSSEKMKKEAISTIPVQPDLETTPEPLPEPLPIESILNVPNGVPVEDSQQPLIESSDKDKNIAGDEAAEETKPLAESYHKDELNPLSNGELNHKDDYTNNENPKSGRKASTPAKQERVENGLQHSPTVPSYMAATESAKAKLRAQGSPRFRQDNERNNLNRRHSLPSPMNAKISSQSPRTQRLVHSGGKGGNKNDKALLGSRDENVNNELDKPKNKCGCACVDTNGDGKCEKVCGLEYSTLIQAASCPIPSPPKWPPILQMPAPDFRAVRTDFFPHKDLPNESCRESMSCPVTMLFTGNNRSFGNILAGSMVPSSLTWNSSDVLYGASLNVLGSESRPTTNNFLDPAFISNLPLYYMQRQCAAGSTLLIPVSIFSLSKTQDITCVQGLPLWRNSSSEVNDEIYKGYQNGNSEGKINEILSGFDFLNSDRNNFNVTIWYNSSYKSDIGRSSNVLLRVPRLVNLVSNGYLKSLFGAGTEMPFEFVKEMPKPATKIKLDFSSLLGALFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYAYFLTVSAVYMFCFVMFGSVIGLKFFTMNDYSIQFVFYLLFINLQVSLAFLVAAMFSTVKTAEVSTYICVFGTGLLGGFLFQFFVEDPSFPRGWIIVMELYPGFLLYRGLYEFAFYSFTGNLMGTYGMRWKDLTDSINGMREVLIIMLVEWIVVLLVAFWIDRGLSTGSWKHPLFFLQRRDKKPPSQNPGLERQGSEVLVQIDQPDVKEERDKVEKLLKEGDPSHVIICDHLKKVYRGKDGNPEKFAVRGLSLALLRGECFGMLGPNGAGKTSFISMMIGLIKPTAGTAFVEGLDIRTEMDGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLKDSALIQAVEESLKGVNLFHGGVADKQAGEYSGAHSMEEAEVLCDRIGIFADGSLQCIGNPKELKARYGGAYVLTMTTSPAHEGDVENMVKRLAPGASKIYRLSGTQKFELPKHQVRIADVFQAVENAKSRFAVLAWGLADSTLEDVFIKVANGTESSDTLS 1431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1131548 1148504 - Cp4.1LG20g02020.1 Cpe20g00197 486826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00197 1431 SMART iq_5 134 155 IPR000048 GO:0005515
Cpe20g00197 1431 SMART iq_5 111 133 IPR000048 GO:0005515
Cpe20g00197 1431 Pfam ABC-2 family transporter protein 787 1093 - -
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 295 310 - -
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 502 518 - -
Cpe20g00197 1431 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 591 1302 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 547 569 - -
Cpe20g00197 1431 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Cpe20g00197 1431 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 591 1302 - -
Cpe20g00197 1431 ProSiteProfiles IQ motif profile. 136 158 IPR000048 GO:0005515
Cpe20g00197 1431 Pfam Protein of unknown function (DUF4005) 497 579 IPR025064 -
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 438 465 - -
Cpe20g00197 1431 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 1303 1430 - -
Cpe20g00197 1431 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1164 1392 IPR003439 GO:0005524
Cpe20g00197 1431 Pfam ABC transporter 1183 1302 IPR003439 GO:0005524
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 345 373 - -
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 345 585 - -
Cpe20g00197 1431 Gene3D - 110 158 - -
Cpe20g00197 1431 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1303 1430 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cpe20g00197 1431 Pfam IQ calmodulin-binding motif 114 133 IPR000048 GO:0005515
Cpe20g00197 1431 Pfam IQ calmodulin-binding motif 136 153 IPR000048 GO:0005515
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 265 332 - -
Cpe20g00197 1431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1160 1337 IPR027417 -
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 472 488 - -
Cpe20g00197 1431 Gene3D - 1151 1303 IPR027417 -
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 532 546 - -
Cpe20g00197 1431 MobiDBLite consensus disorder prediction 380 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00197 - - - csv:101218105 1320.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01069 Cpe20g00197 CCT
Cpe09g01069 Cpe20g00197 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01511 Cpe-Chr4:11913871 Cpe20g00197 Cpe-Chr20:1131548 0 dispersed
Cpe10g01199 Cpe-Chr10:8907292 Cpe20g00197 Cpe-Chr20:1131548 1.48E-08 dispersed
Cpe11g00244 Cpe-Chr11:1322142 Cpe20g00197 Cpe-Chr20:1131548 3.35E-19 dispersed
Cpe20g00197 Cpe-Chr20:1131548 Cpe18g00224 Cpe-Chr18:3887819 1.46E-21 dispersed
Cpe20g00197 Cpe-Chr20:1131548 Cpe04g01509 Cpe-Chr4:11901507 2.75E-42 wgd
Cpe20g00197 Cpe-Chr20:1131548 Cpe09g01069 Cpe-Chr9:9301579 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00197 Cpe_Chr20 FPKM 3.497446 4.574657 3.340472 4.158195 0.900991 0.432654 1.138474 0.186591 0.0 0.0