Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00199 ATGGGGGAAGATTACGAAGCCCTAAAAATGCAATTCCTGGGGATTGTCGGACGGGAAGCGAAGAAATTACCAGAACACGACAAGGAACAACGACAGCGTCCCCACGATGATCAAACAGAGGAAACTGAACTGGTTTCATTGACGCTTGGGAGATATCCAATGGCGGAGAAGAAGAAGGCGGCCGAGGAGAAGAATATCAATGGAGGCGACAAGGAAGCAGTTGTCAAACAGGCTTTATCTCTTGGTTTGAACTGCAAATTCGAGCAGGAATCAACGCCGGCGACTGTTAAAGAAGCTAATTCCCCAAATCGGAGTTTAACTAATAGCATTGATCATGAGACGAAGGAGGATGCTGGCGAGACAAATTGGCCGCCGAGTAAAGGATTGAAGACGATGCGAAGCGTCGACGATGATTCTCTCCCGACGAATCCGCCCAAGCGCGCTCGGATGAACGACGGGTGCCAATGGCGGAAATATGGGCAAAAGATAGCGAAAGGAAACCCCTGTCCACGAGCATACTACCGCTGCACAGGCTCGCCGACATGTCCTGTTAGAAAACAGGTCCAGAGATGCGCCGATGACATGTCGATTTTAATAACTACCTATGAAGGTAACCATAACCACCCATTACCAGCCTCTGCCACCGCTATGGCTTCCACCACCTCCGCCGCTGCTTCCATGCTCCTCTCTGGCTCCTCCACCTCCTCTGCTCCAAACACGACGGCGGCGGCCTCCTCCTCCTCCTCCTCATCTAACCACGCCCTAAGCTTTTACTCAAATTCAAAACAGAACTTTTACATACCCAATAACTCCTCGATCATCTCATCCACTTCCCCAACTCACCCAACAATCACTTTGGATCTCACTTCAAATCCTTCTTCGACCTCAAATCCCTCGACCCATTTTGGTAAATTCCCATCCAGTTTCCCCAATTCTCGCTACCCTTTTACCAGTCAACTCGATTTCGGATCTTCCAGAAACAATGTCTTGTCGTGGAATAACGGCGTTCTTAGTTACAACAGAAATAACCACCCCACTACTACACCCACTAATAATATCTATCAAAATTACATCCAACACCAACGAAACACCGCCATGTCACTGCCACATCAGCAACCGCCATTACCCGACACAATCGCCGCCGCCACTAAGGCCATCACAGCCGACCCCAGCTTCCAATCTGCTCTCGCCGCCGCTCTTACATCCATCATCGGCTCTGGGGGCACCAGCGCCGGTACCGTAAAGTCATCGGCAAGAGGCGAACAACCATTGTTTCAGTTGACATCGACAGCGACAACCACGACGAATAAAGGGAATGGATGTGGGACGAGCTTCTTGAGCAATATTACGACATCAGCGACACCAAGTAATTCTCCGCCGACGGGAAATATGGCATTTGTTCCGGCGAGTTCATTGCCGTTTTCGAATCCAAAGAGCGCATCGGCATCTCCCGGTGATCATATTGATCTTACCAATTAA 1479 49.9 MGEDYEALKMQFLGIVGREAKKLPEHDKEQRQRPHDDQTEETELVSLTLGRYPMAEKKKAAEEKNINGGDKEAVVKQALSLGLNCKFEQESTPATVKEANSPNRSLTNSIDHETKEDAGETNWPPSKGLKTMRSVDDDSLPTNPPKRARMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPASATAMASTTSAAASMLLSGSSTSSAPNTTAAASSSSSSSNHALSFYSNSKQNFYIPNNSSIISSTSPTHPTITLDLTSNPSSTSNPSTHFGKFPSSFPNSRYPFTSQLDFGSSRNNVLSWNNGVLSYNRNNHPTTTPTNNIYQNYIQHQRNTAMSLPHQQPPLPDTIAAATKAITADPSFQSALAAALTSIIGSGGTSAGTVKSSARGEQPLFQLTSTATTTTNKGNGCGTSFLSNITTSATPSNSPPTGNMAFVPASSLPFSNPKSASASPGDHIDLTN 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1150014 1152188 - Cp4.1LG20g01990.1 Cpe20g00199 486828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00199 492 MobiDBLite consensus disorder prediction 19 42 - -
Cpe20g00199 492 MobiDBLite consensus disorder prediction 92 108 - -
Cpe20g00199 492 MobiDBLite consensus disorder prediction 230 251 - -
Cpe20g00199 492 MobiDBLite consensus disorder prediction 452 492 - -
Cpe20g00199 492 Gene3D WRKY domain 142 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe20g00199 492 Pfam WRKY DNA -binding domain 151 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe20g00199 492 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 487 IPR044810 GO:0003700
Cpe20g00199 492 MobiDBLite consensus disorder prediction 92 151 - -
Cpe20g00199 492 ProSiteProfiles WRKY domain profile. 145 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe20g00199 492 MobiDBLite consensus disorder prediction 19 43 - -
Cpe20g00199 492 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 3 487 - -
Cpe20g00199 492 SUPERFAMILY WRKY DNA-binding domain 148 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe20g00199 492 SMART WRKY_cls 150 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe18g00805 Cpe20g00199 CCT
Cpe18g00805 Cpe20g00199 ECH
Cpe04g01513 Cpe20g00199 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00738 Cpe-Chr15:7706728 Cpe20g00199 Cpe-Chr20:1150014 1.00E-35 dispersed
Cpe19g00951 Cpe-Chr19:6777505 Cpe20g00199 Cpe-Chr20:1150014 7.71E-35 dispersed
Cpe18g00805 Cpe-Chr18:7509306 Cpe20g00199 Cpe-Chr20:1150014 2.79E-27 wgd
Cpe20g00199 Cpe-Chr20:1150014 Cpe04g01513 Cpe-Chr4:11927860 1.37E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51104 PF03106 WRKY 4.30E-24 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00199 - - csv:101218344 576.244