Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00200 ATGGCGCCGGTTCTATCTCGGTTACTGTTCCGGCGGATTGTTCAGGCACCATTTCTTCGCACCTCCACCGGCTTTAGCTTTTGCAGAAATGTTCATTCTATCCCTTTCTCTTCGGTGGAAGTGGAGCAAATATCAGGTTCTAAGCCAGGAGAAGTTCATAACTTAGTGCAGGGTAAATGGATTGGATCTTCCGGTTGGAATACTATTGTAGATCCTTTAAATGGAGAGCCATTTATTAAAATTGCTGAAGTTAATGAAACAGAAATTCAGCCATTTGTGAAGAGCCTAACCAAATGCCCCAAGCATGGCTTGCATAATCCTTTCAAATCACCTGAGAGATATCTTTTGTATGGAGATGTATCGTCCAAGGCTGCCGACATGCTTTCGACACCAAAGGTGACTGACTTCTTTGCAAGGTTAATTCAAAGAGTTTCTCCAAAAAGTTATCAGCAAGCTTGGGCTGAAGTCAATGTTACTGTTAAATTTTTAAGGAACTTCTCTGGTGATCAGGTTCGCTTCCTAGCAAGGTCCTTTGCAGTACCTGGAGATCATCTTGGACAACAAAGTCATGGTTACCGTTGGCCTTATGGTCCTGTAGCAATTATCACTCCTTTCAACTTCCCCTTGGAAATTCCTTTACTTCAGGTGATGGGTGCACTTTACATGGGCAACAAACCTGTTCTAAAAGTTGATAGCAAGGTTAGCATAGTTATGGAGCAAATGATTCGATTACTACACCATTGTGGACTTCCTCTTGAAGATTTAGATTTTATAAATTGCGATGGGAAGACGATGAACAAGTTATTGATCGAGGGAAATCCATCCATGACTCTTTTCACTGGTAGCTCAAGAGTGGCAGAGAAGTTGGCTGTCGACTTAAAGGGTCGTATTAAACTGGAAGATGCAGGTTTTGATTGGAAAGTCTTAGGACCAGATGTTCGAGAGGAAGACTATGTTGCATGGGTCTGTGATCAAGATGCATATGCTTGCAGCGGCCAGAAGTGCTCGGCACAGTCCATACTGTTCATGCATGAGAACTGGTCGAAAACTTCACTCATTTCGAAGATAAAGGATCTTGCAGAGAGAAGAAACTTGACTGATCTAACGATTGGCCCTGTTCTTACGTTAACAAATGAAATGATGCTAGATCACATGAACAAATTGCTCAAGATACCAGGAGCAAAGCTACTCTTTGGAGGTGAACCTCTCAAAAACCATTCCATTCCAGCCATTTATGGCGCTATGAAACCCACTGCAGTGTATCTTCCACTCGAAGAAATGATGAAAGATGAGAATTATGAGCTTGTTACTAAGGAAATTTTTGGACCATTTCAGATTATTACTGAATATAAGAGCGATCAACTGTCAGTTGTGTTGGATGCTCTTGAGCGGATGCATGCTCATCTAACAGCAGCGGTTGTTTCAAATGACCCTCTTTTTCTACAGGAAGTTATTGGAAATACTGTAAACGGGACAACGTATGCGGGTTTACGAGCTAGAACAACAGGAGCTCCGCAGAACCATTGGTTTGGACCAGCAGGTGACCCTAGAGGTGCTGGTATTGGAACTCCAGAAGCCATCAAACTCGTATGGTCTTGCCATAGAGAGATCATATATGATATTGGCCCCTTGCCCTTGAATTGGACAACTCCACCATCTTCTTGA 1665 42.64 MAPVLSRLLFRRIVQAPFLRTSTGFSFCRNVHSIPFSSVEVEQISGSKPGEVHNLVQGKWIGSSGWNTIVDPLNGEPFIKIAEVNETEIQPFVKSLTKCPKHGLHNPFKSPERYLLYGDVSSKAADMLSTPKVTDFFARLIQRVSPKSYQQAWAEVNVTVKFLRNFSGDQVRFLARSFAVPGDHLGQQSHGYRWPYGPVAIITPFNFPLEIPLLQVMGALYMGNKPVLKVDSKVSIVMEQMIRLLHHCGLPLEDLDFINCDGKTMNKLLIEGNPSMTLFTGSSRVAEKLAVDLKGRIKLEDAGFDWKVLGPDVREEDYVAWVCDQDAYACSGQKCSAQSILFMHENWSKTSLISKIKDLAERRNLTDLTIGPVLTLTNEMMLDHMNKLLKIPGAKLLFGGEPLKNHSIPAIYGAMKPTAVYLPLEEMMKDENYELVTKEIFGPFQIITEYKSDQLSVVLDALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPLPLNWTTPPSS 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1157827 1162754 + Cp4.1LG20g01920.1 Cpe20g00200 486829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00200 554 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 27 553 IPR044638 GO:0004029
Cpe20g00200 554 SUPERFAMILY ALDH-like 52 522 IPR016161 GO:0016491
Cpe20g00200 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 45 303 IPR016162 GO:0016491
Cpe20g00200 554 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 328 339 IPR016160 GO:0016491
Cpe20g00200 554 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 27 553 - -
Cpe20g00200 554 Pfam Aldehyde dehydrogenase family 69 496 IPR015590 GO:0016491
Cpe20g00200 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 308 496 IPR016163 GO:0016620
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00200 Cpe-Chr20:1157827 Cpe11g00003 Cpe-Chr11:14515 1.41E-14 dispersed
Cpe20g00200 Cpe-Chr20:1157827 Cpe07g00001 Cpe-Chr7:393 1.74E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00200 K00294 - csv:101214440 1038.87