Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00207 TATTCCTTTCTTACACGATCTTTTTTTCCAAATAACCGTCAGATTCGGAGCTGGATTCTGTTTTCCGTTACTCATCCAACGGCCACCTTTGCTTCTTCTCAAATTCCCGGCGAGGGAGTTAAAAAGGAAAAAACGAACGGAAGGGAACAAGAGAGAAAGAGAGGCGATTTTGATTTTCTTACAGAGAATCGAGCTATGGGGAAGGATTACTATAATATACTGAAAGTGAGCCGAAGTGCTAGCGATGAAGATTTGAAGAGAGCTTACAAGAGATTAGCGTTGTTTTGGCATCCAGACAAGAACCCTGCGTATAAGCACGAAGCTGAGGCCAAATTCAAGCAAATTTCGGAGGCTTATGATGTTCTTAGCGATCCTCAGAAGCGTCAGATCTATGACCTTTACGGCGAAGAAACCCTCAAGTCCGGCAAGATTCCGCCGCCTACGCCCCAAGCCACGTCCTCCTCCACGTATTTTCCGGTTTACCAGCATTTTCAACGGCAGCATCCTAATACTTCCACGTTTAAGTTTAAACCTAGGAACGCGGAGGATATTTACGCGGAGTTTTTCGGATCGGAGGGCGGTGGTGGTAGCGGTAGCAATGTCGATGGGGGAGGGAAGAGCAGAGGGGTTAGGGATGCGTTTTCTAGATTTCCGAATGGGGCGGAGAATGGGAGTGGTGCTCAGGGGAGGAAGGCTGCTGCAGTTGAGCATGCGTTGCCTTGCACCTTGGAGGAGCTCTATAAAGGCGCCAAAAAGAAGATGAGGATTTCGAGGAATGTGTATGATGTCTCTGGCAAGTTCCGGACAGTTGAAGAGATATTGACAATTGATATAAAACCAGGGTGGAAGAAGGGGACAAAGATCACTTTTCCTCAGAAGGGAAATCAGGAGCCTGGCATCATTCCAGCAGATCTTATATTTGTAGTGGATGAGAAACCACATGGTATATACCGGAGGGATGGGAATGATCTAGTGGTGAACCATGAACTAACGCTGCTGGAATCACTCACAGGTAAAACTTTTGAATTTACCTCTCTGGATGGAAGGACTCTCATAATCCCTATAACAGATATTGTCAAACTTGGTGATGAGATGGTTCTGGCAAATGAAGGAATGCCAATCTCAAAGGAACCTGGGAAGAAGGGAAACTTGAGAATCAAATTTGATGTCAAGTATCCTTCAAGGCTTACAACAGAACAGAAGTCTGATCTGATAAGAGTTCTTGGTGTAGTTTCATAG 1239 45.44 YSFLTRSFFPNNRQIRSWILFSVTHPTATFASSQIPGEGVKKEKTNGREQERKRGDFDFLTENRAMGKDYYNILKVSRSASDEDLKRAYKRLALFWHPDKNPAYKHEAEAKFKQISEAYDVLSDPQKRQIYDLYGEETLKSGKIPPPTPQATSSSTYFPVYQHFQRQHPNTSTFKFKPRNAEDIYAEFFGSEGGGGSGSNVDGGGKSRGVRDAFSRFPNGAENGSGAQGRKAAAVEHALPCTLEELYKGAKKKMRISRNVYDVSGKFRTVEEILTIDIKPGWKKGTKITFPQKGNQEPGIIPADLIFVVDEKPHGIYRRDGNDLVVNHELTLLESLTGKTFEFTSLDGRTLIIPITDIVKLGDEMVLANEGMPISKEPGKKGNLRIKFDVKYPSRLTTEQKSDLIRVLGVVS 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1192853 1195818 - Cp4.1LG20g02200.1 Cpe20g00207 486836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00207 412 CDD DnaJ_C 235 396 - -
Cpe20g00207 412 Gene3D - 314 394 - -
Cpe20g00207 412 Pfam DnaJ domain 69 132 IPR001623 -
Cpe20g00207 412 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Cpe20g00207 412 MobiDBLite consensus disorder prediction 195 229 - -
Cpe20g00207 412 SUPERFAMILY Chaperone J-domain 68 145 IPR036869 -
Cpe20g00207 412 SUPERFAMILY HSP40/DnaJ peptide-binding domain 236 314 IPR008971 GO:0006457|GO:0051082
Cpe20g00207 412 Pfam DnaJ C terminal domain 235 393 IPR002939 -
Cpe20g00207 412 SUPERFAMILY HSP40/DnaJ peptide-binding domain 317 402 IPR008971 GO:0006457|GO:0051082
Cpe20g00207 412 SMART dnaj_3 68 127 IPR001623 -
Cpe20g00207 412 Gene3D DnaJ domain 66 202 IPR036869 -
Cpe20g00207 412 PRINTS DnaJ domain signature 107 127 IPR001623 -
Cpe20g00207 412 PRINTS DnaJ domain signature 89 104 IPR001623 -
Cpe20g00207 412 PRINTS DnaJ domain signature 71 89 IPR001623 -
Cpe20g00207 412 PRINTS DnaJ domain signature 127 146 IPR001623 -
Cpe20g00207 412 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 67 409 - -
Cpe20g00207 412 ProSiteProfiles dnaJ domain profile. 69 135 IPR001623 -
Cpe20g00207 412 PANTHER BNAA06G20720D PROTEIN 67 409 - -
Cpe20g00207 412 CDD DnaJ 69 124 IPR001623 -
Cpe20g00207 412 Gene3D - 233 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00207 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - csv:101215798 616.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01061 Cpe20g00207 CCT
Cpe09g01061 Cpe20g00207 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01433 Cpe-Chr1:8595176 Cpe20g00207 Cpe-Chr20:1192853 1.72E-135 dispersed
Cpe08g00742 Cpe-Chr8:5880470 Cpe20g00207 Cpe-Chr20:1192853 3.09E-16 dispersed
Cpe10g00177 Cpe-Chr10:1052646 Cpe20g00207 Cpe-Chr20:1192853 2.63E-126 dispersed
Cpe14g00943 Cpe-Chr14:7951739 Cpe20g00207 Cpe-Chr20:1192853 3.70E-16 dispersed
Cpe15g00720 Cpe-Chr15:7598678 Cpe20g00207 Cpe-Chr20:1192853 1.48E-135 dispersed
Cpe16g00405 Cpe-Chr16:5553751 Cpe20g00207 Cpe-Chr20:1192853 2.15E-127 dispersed
Cpe20g00207 Cpe-Chr20:1192853 Cpe09g01061 Cpe-Chr9:9244333 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g489 Blo04g00756 Blo16g00200 . . . Bpe13g00271 Bma06g00188 . Cmo13g00951 Cmo18g00102 . . . . . Cpe20g00207 . . . . . . . . . . . . . . . Cone2ag0864 Cone16ag0143 . . . Csa01g00799 Chy12g01317 Cme12g01743 . . Bda11g01684 Bda14g00836 . Bpe15g00616 Bma03g00809 . Sed08g2567 . . . Cma18g00131 Car13g00762 Car18g00123 Cpe09g01061 . Bhi08g01425 Tan05g2072 Cmetu12g0983 Lac10g0382 Hepe07g2276 . . Cla01g01417 Cam01g1483 Cec01g1522 Cco01g1569 Clacu01g1507 Cmu01g1399 Cre01g1319 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006344 2 2 2 2 2 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00207 Cpe_Chr20 FPKM 12.375429 13.470293 11.189315 10.146302 5.101737 4.980933 5.219368 11.638271 10.895206 10.973184