Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00216 ATGGCGCTATCACCGTATTTGTCCGTGCCGAATCATCTTGAAATTTCTACAACGTTTCAGCAGCGGTATTTACTGTCTCAACAACTTCCATTTCTCTCAAACCGTTCCAATTTCAGTGTTCGCCGTAGATTTTTCTCAGATAACTGGAGCTTGTTCTCCGACGTTGGGAAGTGTAGAGCGAAGCCGAAGGATCTCGTTCTTGGAAATCCGTCGGTAATTGTTGAGAAAGGCAAGTACAGCTATGACGTTGAAACCCTAATTAATAAGCTCAGTAGCCTCCCGCCTCGAGGCAGCATAGCACGATGCCTCGATATCTTTAAGAATAGGCTTTCGCTCAATGACTTCAGCTTGGTTTTTAAGGAATTCGCGGCGCGCGGGGACTGGCAACGTTCGTTACGCCTCTTCAAATACATGCAGCGTCAGATATGGTGCAAGCCGAACGAGCACATCTATACCATCATGATCAGCTTGCTCGGCCGCGAAGGATTGCTAGAGAAATGTAGCGAGATATTCGATGAAATGGCGAGCCAGGGCGTAATACGTAGCGTATTTTCTTATACCGCTTTGATAAATGCCTACGGGCGCAATGGTCAGTACGAAATCTCACTTGAACTTCTTGAAAGGATGAAAAGAGATAGAGTGTCGCCTAATATATTGACTTACAATACCGTGATAAATGCATGCGCTAGAGGTGATTTGGATTGGGAGGGATTGTTGGGATTGTTTGCCGAGATGAGGCATGAAGGGGTTCAACCTGATCTTGTTACCTATAATACTTTGCTTAGTGCATGTGCTGCCCGCAGTTTAGGCGATGAGGCAGAGATGGTCTTCAAGACTATGATAGAAGGAGGGATAGTCCCTGAGATAACAACCTATAGTTATATTGTCGAGACATTTGGAAAATTGGGTAAGCTCGAGAAAGTTGCTATGCTGCTAAAAGAAATGGAATCCGAAGGGTATTTGCCCGATATATCATCCTACAATGTGTTAATAGACGCACATGCAAAATCCGGGTCGATTAAGGAGGCAATGGACGTGTTTAAGCAGATGCAAGCTGCAGGATGTGTGCCAAATGCATCCACTTATAGCATTCTATTGAATTTATATGGAAAGCATGGGAGGTATGATGATGTTCGAGAGCTTTTTCTTGAAATGAAAGAGAGCAGTGCCGAGCCAGATGCAACTACTTACAACATTCTCATTCGAGTATTTGGCGAGGGTGGATACTTCAAGGAGGTTGTAACTCTGTTTCATGATTTGGTGGAGGAGAAGATTGACCCAAATATGGAGACATACGAGGGCTTAGTGTTTGCTTGTGGGAAGGGGGGGCTGCACGAGGATGCCAAGAAAATTTTACTTCACATGAATGAGAAAGGAATGGTTCCAAGTTCTAAGGCATATGGTGGACTGATTGAAGCATACGGACAGGCTGCATTGTATGATGAAGCTCTTGTTGCCTTTAACACAATGAACGAAGTGGGAAGTAAGTCAACTGTTGATACCTATAATTCGCTAATTCACACATTCGCTAGGGGTGGACTCTACAAGGAGCTTGAAGCAATCATATCGAGAATGGGAGAGTCTGGCATTTCAAGGAATGCAAAATCATTTAGTGGTATTATTGAATGTTACAGGCAAAGTGGTCAGTTTGAAGAAGCTATAAAGGCCTTTGTTGAGATGGAAAAAATGAGATGTAAACCTGATGAGCAGACACTTGAGGCAGTTTTAGGTGTTTATTGCTTTGCAGGTCTTGTAGATGAGAGCAAGGAGCAGTTTCATGAAATTAAAGCTTCAGGAATAGTGCCTAGTGTATTGTGCTACTGCATGATGCTGGCAGTTTATGCCAAGAATGGCAGGAACGTTACCAACCTGCTTCAGTTCCTCTTTGGAGAACATCTGGATGAGATTGTTTTTGTGGTTGCTACTAGGTGGGATAATGCCTATGAGTTACTCGATGAGATGATTAAAAACAGGGAATCTGCAACAAAACGAGGCCTTTTCCCTGAACTTTTCCGCAAAAGCAAACTTGTGTGGTCTGTGGATGTCCACAGAATGTGGGAAGGCGGTGCATATACGGCTATATCTCTTTGGGTTAACAAAATGAATGAAATGCTTATGGATGGGGAGGAGCTGCCTCAGGTTGCAGCTGTAGTAGTTGGGAGGGGGTGGCTGGAGAAGGACACAACCGCACAAAACTTGCCTATCCCAAGGGCTGTCTATTCATTCCTGCAGGATAATGTGTCATCGTCCTTCACTTTTCCTGGGTGGAACAACGGTCGAATCGTCTGCCAACCGTCTCAACTGAAGCAGCTTCTCGCAGACACAGAAGCATCATCTAGTGAAATTATTACTCTAAACAACTCCCCATTAAATCTTCCAGAAGCGAAGATATCCAGATCTGGTATAAGCAATGACAAATACGAAGATGTTGATTCTAAATCAAGTAACAGGACGGGAACTGAGCTTCTGACTGCAACTGTTTGA 2484 44.0 MALSPYLSVPNHLEISTTFQQRYLLSQQLPFLSNRSNFSVRRRFFSDNWSLFSDVGKCRAKPKDLVLGNPSVIVEKGKYSYDVETLINKLSSLPPRGSIARCLDIFKNRLSLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYEISLELLERMKRDRVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARSLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIDAHAKSGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVEEKIDPNMETYEGLVFACGKGGLHEDAKKILLHMNEKGMVPSSKAYGGLIEAYGQAALYDEALVAFNTMNEVGSKSTVDTYNSLIHTFARGGLYKELEAIISRMGESGISRNAKSFSGIIECYRQSGQFEEAIKAFVEMEKMRCKPDEQTLEAVLGVYCFAGLVDESKEQFHEIKASGIVPSVLCYCMMLAVYAKNGRNVTNLLQFLFGEHLDEIVFVVATRWDNAYELLDEMIKNRESATKRGLFPELFRKSKLVWSVDVHRMWEGGAYTAISLWVNKMNEMLMDGEELPQVAAVVVGRGWLEKDTTAQNLPIPRAVYSFLQDNVSSSFTFPGWNNGRIVCQPSQLKQLLADTEASSSEIITLNNSPLNLPEAKISRSGISNDKYEDVDSKSSNRTGTELLTATV 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1232696 1239688 - Cp4.1LG20g02190.1 Cpe20g00216 486845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Cpe20g00216 827 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 33 620 - -
Cpe20g00216 827 Gene3D Tetratricopeptide repeat domain 234 391 IPR011990 GO:0005515
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Cpe20g00216 827 Pfam PPR repeat family 322 368 IPR002885 -
Cpe20g00216 827 ProSiteProfiles Smr domain profile. 680 769 IPR002625 -
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Cpe20g00216 827 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 33 620 - -
Cpe20g00216 827 Pfam Pentacotripeptide-repeat region of PRORP 481 595 IPR033443 -
Cpe20g00216 827 Gene3D Tetratricopeptide repeat domain 408 557 IPR011990 GO:0005515
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cpe20g00216 827 Pfam Pentatricopeptide repeat domain 373 406 IPR002885 -
Cpe20g00216 827 Pfam Pentatricopeptide repeat domain 241 301 IPR002885 -
Cpe20g00216 827 Pfam Pentatricopeptide repeat domain 416 476 IPR002885 -
Cpe20g00216 827 Pfam Pentatricopeptide repeat domain 170 228 IPR002885 -
Cpe20g00216 827 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 656 788 - -
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cpe20g00216 827 SMART SMR_2 677 766 IPR002625 -
Cpe20g00216 827 MobiDBLite consensus disorder prediction 806 827 - -
Cpe20g00216 827 Gene3D Tetratricopeptide repeat domain 559 627 IPR011990 GO:0005515
Cpe20g00216 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Cpe20g00216 827 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 656 788 - -
Cpe20g00216 827 Gene3D Tetratricopeptide repeat domain 92 233 IPR011990 GO:0005515
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 536 569 IPR002885 -
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 150 180 IPR002885 -
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 184 218 IPR002885 -
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 255 287 IPR002885 -
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 501 533 IPR002885 -
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 220 253 IPR002885 -
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Cpe20g00216 827 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00216 - - - mcha:111008838 1170.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01424 Cpe-Chr5:9963379 Cpe20g00216 Cpe-Chr20:1232696 1.69E-14 dispersed
Cpe12g00886 Cpe-Chr12:7707411 Cpe20g00216 Cpe-Chr20:1232696 1.34E-76 dispersed
Cpe15g00451 Cpe-Chr15:5608901 Cpe20g00216 Cpe-Chr20:1232696 1.43E-19 dispersed
Cpe17g00741 Cpe-Chr17:5864632 Cpe20g00216 Cpe-Chr20:1232696 6.95E-78 dispersed
Cpe20g00216 Cpe-Chr20:1232696 Cpe04g00896 Cpe-Chr4:8182850 9.76E-25 dispersed
Cpe01g02446 Cpe-Chr1:20292166 Cpe20g00216 Cpe-Chr20:1232696 3.96E-07 transposed
Cpe02g01110 Cpe-Chr2:10160778 Cpe20g00216 Cpe-Chr20:1232696 1.53E-12 transposed
Cpe03g00530 Cpe-Chr3:3106653 Cpe20g00216 Cpe-Chr20:1232696 1.31E-22 transposed
Cpe07g00771 Cpe-Chr7:6821547 Cpe20g00216 Cpe-Chr20:1232696 5.04E-07 transposed
Cpe10g00584 Cpe-Chr10:3406419 Cpe20g00216 Cpe-Chr20:1232696 4.36E-31 transposed
Cpe20g00216 Cpe-Chr20:1232696 Cpe09g01050 Cpe-Chr9:9183071 3.47E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g671 . . . . . . Bma06g00193 . . Cmo18g00111 . . . . . Cpe20g00216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi08g01440 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008894 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00216 Cpe_Chr20 FPKM 8.903134 9.653353 8.042421 8.229736 10.662082 9.452133 10.698169 10.822315 10.576965 12.100207