Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe20g00223 | ATGGCGGCTCTGCCATCCTCTTCCGCTCTACCGGATTCTTGTTCCTCCAGGCACCACACTTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGATGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTACGATATCGTGAATGTCTTGGAAAGCGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAAGGAGAATTGTAGTGCATCTGATTGCAACGATTATGCAAAAGTCTCGGATGATGAAGACGACGATGAAAGATTTTCCAATCCGACTGGAAGCCAGAACTCAACTGCAGCCGTGCCGAAATCATCTTCATCATCGCTGAAAGCCGACAATAGAAGGGAAAAGTCATTGGCTCTCCTGACGCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCAGCAAAACTCTTATTAGGAGATGGTCACAATTCATCAATAATGAGAAGCAACAAAGGTAAGGAGGCTATATGA | 624 | 44.87 | MAALPSSSALPDSCSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDCNDYAKVSDDEDDDERFSNPTGSQNSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRSNKGKEAI | 207 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 1263022 | 1266507 | + | Cp4.1LG20g02150.1 | Cpe20g00223 | 486852 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe20g00223 | 207 | PANTHER | TRANSCRIPTION FACTOR E2F | 7 | 200 | IPR015633 | GO:0000978|GO:0006357 | |
| Cpe20g00223 | 207 | Pfam | E2F/DP family winged-helix DNA-binding domain | 24 | 88 | IPR003316 | GO:0005667|GO:0006355 | |
| Cpe20g00223 | 207 | MobiDBLite | consensus disorder prediction | 131 | 149 | - | - | |
| Cpe20g00223 | 207 | MobiDBLite | consensus disorder prediction | 119 | 153 | - | - | |
| Cpe20g00223 | 207 | SUPERFAMILY | Winged helix DNA-binding domain | 22 | 86 | IPR036390 | - | |
| Cpe20g00223 | 207 | PANTHER | E2F TRANSCRIPTION FACTOR-LIKE E2FF | 7 | 200 | - | - | |
| Cpe20g00223 | 207 | Gene3D | - | 150 | 202 | IPR036388 | - | |
| Cpe20g00223 | 207 | Gene3D | - | 18 | 91 | IPR036388 | - | |
| Cpe20g00223 | 207 | SMART | E2F_TDP_2 | 155 | 207 | IPR003316 | GO:0005667|GO:0006355 | |
| Cpe20g00223 | 207 | SMART | E2F_TDP_2 | 23 | 88 | IPR003316 | GO:0005667|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe18g00824 | Cpe20g00223 | CCT | |
| Cpe09g01047 | Cpe20g00223 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe19g00497 | Cpe-Chr19:4261540 | Cpe20g00223 | Cpe-Chr20:1263022 | 4.24E-12 | dispersed | |
| Cpe18g00824 | Cpe-Chr18:7638013 | Cpe20g00223 | Cpe-Chr20:1263022 | 9.67E-07 | wgd | |
| Cpe20g00223 | Cpe-Chr20:1263022 | Cpe09g01047 | Cpe-Chr9:9165627 | 4.36E-06 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51107 | PF02319 | E2F_TDP | 1.60E-21 | CL0123 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe20g00223 | K09391 | - | csv:101219210 | 364.77 |