Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00223 ATGGCGGCTCTGCCATCCTCTTCCGCTCTACCGGATTCTTGTTCCTCCAGGCACCACACTTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGATGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTACGATATCGTGAATGTCTTGGAAAGCGTCGGGGTTCTCTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGGGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAAGGAGAATTGTAGTGCATCTGATTGCAACGATTATGCAAAAGTCTCGGATGATGAAGACGACGATGAAAGATTTTCCAATCCGACTGGAAGCCAGAACTCAACTGCAGCCGTGCCGAAATCATCTTCATCATCGCTGAAAGCCGACAATAGAAGGGAAAAGTCATTGGCTCTCCTGACGCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCAGCAAAACTCTTATTAGGAGATGGTCACAATTCATCAATAATGAGAAGCAACAAAGGTAAGGAGGCTATATGA 624 44.87 MAALPSSSALPDSCSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKENCSASDCNDYAKVSDDEDDDERFSNPTGSQNSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRSNKGKEAI 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1263022 1266507 + Cp4.1LG20g02150.1 Cpe20g00223 486852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00223 207 PANTHER TRANSCRIPTION FACTOR E2F 7 200 IPR015633 GO:0000978|GO:0006357
Cpe20g00223 207 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Cpe20g00223 207 MobiDBLite consensus disorder prediction 131 149 - -
Cpe20g00223 207 MobiDBLite consensus disorder prediction 119 153 - -
Cpe20g00223 207 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Cpe20g00223 207 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 7 200 - -
Cpe20g00223 207 Gene3D - 150 202 IPR036388 -
Cpe20g00223 207 Gene3D - 18 91 IPR036388 -
Cpe20g00223 207 SMART E2F_TDP_2 155 207 IPR003316 GO:0005667|GO:0006355
Cpe20g00223 207 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00223 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 364.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe18g00824 Cpe20g00223 CCT
Cpe09g01047 Cpe20g00223 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00497 Cpe-Chr19:4261540 Cpe20g00223 Cpe-Chr20:1263022 4.24E-12 dispersed
Cpe18g00824 Cpe-Chr18:7638013 Cpe20g00223 Cpe-Chr20:1263022 9.67E-07 wgd
Cpe20g00223 Cpe-Chr20:1263022 Cpe09g01047 Cpe-Chr9:9165627 4.36E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51107 PF02319 E2F_TDP 1.60E-21 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00223 Cpe_Chr20 FPKM 73.64534 81.637283 268.05838 260.63089 78.698418 74.831932 72.923203 46.47308 45.282513 43.294792