Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00225 ATGGTTGGCCATGGCAATCACAGGTTGAAACTCTCCATCTTCCACCACCGATCTTCGTCGGACTCGAAACCTGAACGGCCGGTAGAGTATCCCAGAGAGTACCTCTGCGAAATTTCGAAGTCGTTAATGGCGGATCCGGTTGTCGTTTCCTCCGGACAGACGTTCGAGCGCCTCTGTGTTCAAGTTTGTCAAGAATTGGGGTTTTCGCCGAAGCTTGAAGATGGGTCGAGACTGGATTGCACCTCTGTTATAACCAACAGAAACATGAGATTCACCATTCTCAAATGGTGCGATGACAACGGAATCGAACACCCACGACCCCCTCAGTACACCTCTATTGAACTCGTTGTTCGTCAATTAATGGAGAGGGAGAGACAAGAGAATCGATTCGAGACTTCTGATAGCGAGTTGTTAAGAGGCGTCGCCGATAAACCGCCGGGAGTTGCAGTTCATGCGACTACGGAGGTTGGGTTCCGAGTCAACCGATTTCAACTCAACTCGCCGCCGGAAACGGAGGAGATCGTACGTGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTTGTTACGCCGCTCATTCTTCGTCCTCTTCGAGCTTCGACAGAGGAAGTTCCGATTCGTATACACCAAATTCAGAAGAGGAATCTCATCTCATCATGAAATTCAGAAGCGGCGATGAATTCGAACAACAAGAAGGAGTGATTTCCCTAAGAAAATTGACCAAATCCAACGAATCAATTAGGGCTTCTTTATGCACAAAGGAATTCCTCGCCGCACTACTTCCTCTGGTTTCATCCAGATCTACAAATATCCAGATCAATGCCGTTGCTTCCGTCGTGAATCTCTCCCTCGAGAAGTCGAACAAATTGAAGATCCTCCGAGCAGGATTCGTTCCGTCATTAATCGACGTTTTAGACAGCGGATACGCGGAATCTCAAGAACACGCAGCCGGTGCTCTGTTCAGTTTATCATTAGAGGACGAAAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTACTGATGAACACACTCCGATCCGAGAGTGAGCGGACGAGGAACGATTCGGCTCTTTGTTTGTACCATTTGACTCTAAACCCTAGCAACCGTGTGAAACTAGTGAAACTCGGCGCCGTTCCAATACTTCTATCGTCGACGAGAATCGAAGGCTCTGCGAGCCGAATCCTGTTGATTCTGTGCAATCTCGCCGTCTGTGCCGACGGAAGATCGGCGATGCTGGATGCGAACGCGGTGGATTGTTTGGTCGGGATGTTGAGGGAGAAAGAGATTGATTCCGAGTCGACTCGGGAGAATTGTGTGGTTGCGCTGCACGCATTGAGTCAAGGAGGATTCCGATTCAAGGGATTGGCGAAGGCGGCCGGCGCGGTAGAGGTTCTAAGAGAGGTTGAAGAAAGGGGAAGCGAGAGGGCGCGGGAGAAGGCCAAGAGGATCTTGGAGATGATGAGAACTGGCGGCAGCGGTTCCGTTGAGATCGAAGGCGTCCGCCGACATGGGCTCGACGCCGGTGGAGTCAGCTGGACCGGCCGGGCTGGTGCTGCCTTGAACCGGTATTCTACCAATACTACTAAGTTTTGA 1599 50.66 MVGHGNHRLKLSIFHHRSSSDSKPERPVEYPREYLCEISKSLMADPVVVSSGQTFERLCVQVCQELGFSPKLEDGSRLDCTSVITNRNMRFTILKWCDDNGIEHPRPPQYTSIELVVRQLMERERQENRFETSDSELLRGVADKPPGVAVHATTEVGFRVNRFQLNSPPETEEIVRESTILPFKTQPSCYAAHSSSSSSFDRGSSDSYTPNSEEESHLIMKFRSGDEFEQQEGVISLRKLTKSNESIRASLCTKEFLAALLPLVSSRSTNIQINAVASVVNLSLEKSNKLKILRAGFVPSLIDVLDSGYAESQEHAAGALFSLSLEDENKMAIGILGALPVLMNTLRSESERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSSTRIEGSASRILLILCNLAVCADGRSAMLDANAVDCLVGMLREKEIDSESTRENCVVALHALSQGGFRFKGLAKAAGAVEVLREVEERGSERAREKAKRILEMMRTGGSGSVEIEGVRRHGLDAGGVSWTGRAGAALNRYSTNTTKF 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1295346 1296944 + Cp4.1LG20g02250.1 Cpe20g00225 486854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00225 532 SUPERFAMILY ARM repeat 222 489 IPR016024 -
Cpe20g00225 532 MobiDBLite consensus disorder prediction 193 214 - -
Cpe20g00225 532 SUPERFAMILY RING/U-box 16 107 - -
Cpe20g00225 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 105 IPR013083 -
Cpe20g00225 532 Gene3D - 215 394 IPR011989 -
Cpe20g00225 532 Gene3D - 395 493 IPR011989 -
Cpe20g00225 532 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Cpe20g00225 532 Pfam U-box domain 31 100 IPR003613 GO:0004842|GO:0016567
Cpe20g00225 532 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Cpe20g00225 532 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 497 - -
Cpe20g00225 532 PANTHER U BOX DOMAIN-CONTAINING 1 497 - -
Cpe20g00225 532 MobiDBLite consensus disorder prediction 193 215 - -
Cpe20g00225 532 Pfam Armadillo/beta-catenin-like repeat 327 365 IPR000225 GO:0005515
Cpe20g00225 532 SMART arm_5 243 284 IPR000225 GO:0005515
Cpe20g00225 532 SMART arm_5 406 449 IPR000225 GO:0005515
Cpe20g00225 532 SMART arm_5 285 325 IPR000225 GO:0005515
Cpe20g00225 532 SMART arm_5 326 366 IPR000225 GO:0005515
Cpe20g00225 532 SMART arm_5 367 405 IPR000225 GO:0005515
Cpe20g00225 532 CDD RING-Ubox 35 71 - -
Cpe20g00225 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 333 IPR000225 GO:0005515
Cpe20g00225 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00225 Cpe-Chr20:1295346 Cpe01g00910 Cpe-Chr1:5374541 1.74E-14 dispersed
Cpe01g02363 Cpe-Chr1:19763882 Cpe20g00225 Cpe-Chr20:1295346 7.65E-150 wgd
Cpe13g00921 Cpe-Chr13:7813731 Cpe20g00225 Cpe-Chr20:1295346 2.15E-155 wgd
Cpe18g00826 Cpe-Chr18:7657630 Cpe20g00225 Cpe-Chr20:1295346 3.07E-178 wgd
Cpe20g00225 Cpe-Chr20:1295346 Cpe04g01536 Cpe-Chr4:12057760 0 wgd
Cpe20g00225 Cpe-Chr20:1295346 Cpe09g01045 Cpe-Chr9:9139986 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00225 - - csv:101221183 874.389