Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00227 ATGAAAGAATTTCGGGGCTCAGCGGAGGAGCGGAAATTGAAAACCCATTTTCTCCACTCTGATAAACCCTCTCCGATCTCTCTCCCCTTCAATTCTTCGGAGATGGGAGAAGTCAAACGTAAAAGAGGTCGAAAGCCGAAAAATTCCAAGGCGGATTCTCTAGATTTTCCTCCGCCGACCACTGCTACCGTCACCAGTGTTGCGATGGTTATGGACGACGTTTTTTCAGTCAGCAACGTCGAGCTCATGGACCCGGCCTCCACTTCTAAACCTCACCAGAACCGCCGTGGGAGGCCGAAGAAGCTTTCGAAACATTTGGAAAATCCCGACAAGTTCCCGCAATTGTCTCCTTCTAGACGTGGCCCTCGTGGTGTCGAAAATGGCGAATTTACCGCTTCCGGCGACGTCTTTCCATCTGATATCGCTTTGGAACGGGTGCAGCCGGAGTGGCCGGGCATCGTGAGAGTCGTGCCGGCGATGGATGCTGTGGTCAAGGTATTTTGTGTGCACACGGAGCCGAATTTCTCACTTCCTTGGCAGAGAAAGAGACAATATAGTTCGAGTAGCAGTGGATTTGTGATTGGTGGAAGGAGAGTGCTCACTAATGCTCATTCCGTCGAGCATCATACCCAGGTTAAGCTTAAGAAGCGTGGGTCGGATACGAAGTACTTGGCGACCGTACTTGCGATTGGAACTGAATGCGATATCGCAATGCTTACTGTTGATGATGACGAGTTTTGGGTGGGAGTTTCACCGGTAGAATTTGGGGAGTTACCTGCACTGCAAGATGCAGTAACTGTTGTTGGTTACCCAATTGGAGGTGATACAATTTCTGTCACAAGTGGGGTTGTATCGCGGATAGAGATCCTGTCTTATGTTCATGGGTCTACTGAGCTTCTCGGTCTGCAGATAGATGCTGCTATAAACTCGGGTAATTCTGGTGGGCCTGCCTTTAATGATAAAGGAAACTGTGTGGGCATTGCATTTCAGTCGCTCAAGCATGAAGATGCAGAAAATATAGGTTATGTCATACCAACGCCAGTTATCTTGCATTTTATACGGGATTACGAGAAGAATGGAGCATATACAGGCTTTCCAATTCTTGGTCTTGAGTGGCAGAAAATGGAAAATCCTGATCTTTGTGAGGCTATGGGGATGAAAAAAGATCAGAAGGGTGTCCGTATTAGACGTATTGATCCCACTGGCCCAGAATCCAAAGTTTTGAAGCCATCAGATATTATTCTCGGCTTTGATGGGGTTGATATTGCTAATGATGGAACAGTTCCTTTCCGGCACGGTGAGCGTATAGGATTCAGTTACCTTGTCTCCCAGAAATATACTGGTGATAGTGCAACAATAAAAGTTCTGCGCAACTCTGAGACACTCAGTTTTAATTACCAGCTTGCAACATACAGAAGGCTCATTCCTGCACATAATGAGGGCAAACCCCCTTCTTATTACATTATTGCAGGATTTGTTTTTTCCACTGTCTCCGTTCCTTATCTCCGTTCTGAGTACGGAAAGGATTATGAATATGAAGCTCCAGTCAAACTATTGGACAAATTATTGCATTCAATGCCACAATCACCAGATGAGCAGCTAGTGGTGGTTTCTCAGGTACTCGTGGCTGATATCAACATTGGATATGAAGACATTGTTAACACCCAGGTTCTTGCTTTCAATGGTAAACCTGTGAAGAACCTCAAGAGCTTGGCTAACATGGTTGAAAGTTGCGATGATGAGTTTTTGAAGTTCGATTTAGAATATCAACAGATAGTTGTCCTCCGTACAAGCACAGCGAAAGCAGCCACTTTAGATATTCTGGCCACACACTGCATACCCTCAGCTATGTCTAACGATCTCAAGACCTAA 1872 45.83 MKEFRGSAEERKLKTHFLHSDKPSPISLPFNSSEMGEVKRKRGRKPKNSKADSLDFPPPTTATVTSVAMVMDDVFSVSNVELMDPASTSKPHQNRRGRPKKLSKHLENPDKFPQLSPSRRGPRGVENGEFTASGDVFPSDIALERVQPEWPGIVRVVPAMDAVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWVGVSPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVILHFIRDYEKNGAYTGFPILGLEWQKMENPDLCEAMGMKKDQKGVRIRRIDPTGPESKVLKPSDIILGFDGVDIANDGTVPFRHGERIGFSYLVSQKYTGDSATIKVLRNSETLSFNYQLATYRRLIPAHNEGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNTQVLAFNGKPVKNLKSLANMVESCDDEFLKFDLEYQQIVVLRTSTAKAATLDILATHCIPSAMSNDLKT 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1306482 1313815 + Cp4.1LG20g02270.1 Cpe20g00227 486856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00227 623 MobiDBLite consensus disorder prediction 84 132 - -
Cpe20g00227 623 Gene3D - 248 358 IPR043504 -
Cpe20g00227 623 Pfam PDZ domain 385 465 IPR001478 GO:0005515
Cpe20g00227 623 SUPERFAMILY Trypsin-like serine proteases 159 360 IPR009003 -
Cpe20g00227 623 Gene3D - 365 473 IPR036034 GO:0005515
Cpe20g00227 623 Pfam Trypsin-like peptidase domain 190 327 - -
Cpe20g00227 623 SUPERFAMILY PDZ domain-like 391 472 IPR036034 GO:0005515
Cpe20g00227 623 Gene3D - 147 246 IPR043504 -
Cpe20g00227 623 CDD PDZ_serine_protease 366 463 - -
Cpe20g00227 623 PANTHER PROTEASE DO-LIKE 9 38 623 - -
Cpe20g00227 623 MobiDBLite consensus disorder prediction 1 60 - -
Cpe20g00227 623 PRINTS HtrA/DegQ protease family signature 407 419 IPR001940 GO:0004252|GO:0006508
Cpe20g00227 623 PRINTS HtrA/DegQ protease family signature 298 315 IPR001940 GO:0004252|GO:0006508
Cpe20g00227 623 PRINTS HtrA/DegQ protease family signature 219 239 IPR001940 GO:0004252|GO:0006508
Cpe20g00227 623 PRINTS HtrA/DegQ protease family signature 191 203 IPR001940 GO:0004252|GO:0006508
Cpe20g00227 623 PRINTS HtrA/DegQ protease family signature 261 285 IPR001940 GO:0004252|GO:0006508
Cpe20g00227 623 MobiDBLite consensus disorder prediction 1 19 - -
Cpe20g00227 623 Pfam PDZ domain 475 620 IPR041517 -
Cpe20g00227 623 PANTHER - 38 623 - -
Cpe20g00227 623 Gene3D - 474 623 IPR046449 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00227 K25897 DEGP9; protease Do-like 9 [EC:3.4.21.-] - csv:101219688 1101.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g01042 Cpe20g00227 CCT
Cpe09g01042 Cpe20g00227 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00780 Cpe-Chr7:6912774 Cpe20g00227 Cpe-Chr20:1306482 5.54E-143 dispersed
Cpe17g00817 Cpe-Chr17:6380379 Cpe20g00227 Cpe-Chr20:1306482 1.04E-169 dispersed
Cpe20g00227 Cpe-Chr20:1306482 Cpe09g01042 Cpe-Chr9:9115289 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g706 Blo04g00740 . . . . . . . Cmo13g00928 Cmo18g00119 . . . . . Cpe20g00227 . . . . . . . . . . . . . . . Cone2ag0889 Cone16ag0121 . . Lsi02g00353 Csa01g00829 Chy12g01288 Cme12g01714 . . . Bda14g00819 . Bpe15g00630 . . Sed08g2488 . . Cma13g00902 Cma18g00151 Car13g00742 Car18g00145 Cpe09g01042 . Bhi08g01579 Tan05g2035 Cmetu12g0872 Lac10g0425 Hepe07g2245 . . Cla01g01391 Cam01g1452 Cec01g1487 . Clacu01g1476 Cmu01g1371 Cre01g1286 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004589 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00227 Cpe_Chr20 FPKM 22.632788 25.852333 18.14966 18.173107 19.488161 19.69405 19.510752 29.420235 27.636551 27.259949